Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_F18
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 34 0.12
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.9
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 5.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 5.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.9
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/69 (27%), Positives = 22/69 (31%)
Frame = +2
Query: 683 PPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXPRXXLDXCFFXXSPXPX 862
PP PP P P G+P+ T PP+ P P
Sbjct: 661 PPNIQPPVPHPPPMGFPFQHQLTQLPGQPRPAGLPPGVPPMFNLNAPPPPGIPGYPPAPP 720
Query: 863 PRGPXPPPP 889
P G PPPP
Sbjct: 721 PPGVGPPPP 729
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/81 (29%), Positives = 26/81 (32%)
Frame = +2
Query: 647 PXXXAGXPXXLLPPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXPRXXL 826
P AG L P PP P P P + P +G PP P L
Sbjct: 696 PSTSAGGSSALPPITGGPPPPPGLP---PITGGPPPPPPPGGLPPITGGPPPP-PPPGGL 751
Query: 827 DXCFFXXSPXPXPRGPXPPPP 889
P P P G PPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/81 (29%), Positives = 26/81 (32%)
Frame = +2
Query: 647 PXXXAGXPXXLLPPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXPRXXL 826
P AG L P PP P P P + P +G PP P L
Sbjct: 696 PSTSAGGSSALPPITGGPPPPPGLP---PITGGPPPPPPPGGLPPITGGPPPP-PPPGGL 751
Query: 827 DXCFFXXSPXPXPRGPXPPPP 889
P P P G PPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPP 772
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/81 (29%), Positives = 26/81 (32%)
Frame = +2
Query: 647 PXXXAGXPXXLLPPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXPRXXL 826
P AG L P PP P P P + P +G PP P L
Sbjct: 279 PSTSAGGSSALPPITGGPPPPPGLP---PITGGPPPPPPPGGLPPITGGPPPP-PPPGGL 334
Query: 827 DXCFFXXSPXPXPRGPXPPPP 889
P P P G PPPP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPP 355
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 679 SSPXXPSXXXXPLPXRXPLESXSHRPGAXSXAVPXXXSRPPPLLXP 816
S+P P+ P P + P +HR +P SRPPP++ P
Sbjct: 157 STPLAPTTPTPPPPTQAPT---NHRELLLDFPLPVDFSRPPPVIPP 199
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = -1
Query: 851 GTXXRNXSPXXXGXSKGGGRDXXXGTAXEXAPGLWEXDSKGXRXGSGXXXXXGXXGEEGX 672
G R+ +P G GRD G +PG + S+G G G GE G
Sbjct: 182 GNKGRDGNPGRDGSPGRPGRDGTRGVGQPGSPG--QPGSRGPEGPRGQPGNMGRPGEYGD 239
Query: 671 XG 666
G
Sbjct: 240 AG 241
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -1
Query: 803 GGGRDXXXGTAXEXAPGLWEXDSKGXRXGSGXXXXXGXXGEEGXXG 666
GGG G A PG + G + G G G G++G G
Sbjct: 185 GGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGG 230
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -1
Query: 803 GGGRDXXXGTAXEXAPGLWEXDSKGXRXGSGXXXXXGXXGEEGXXG 666
GGG G A PG + G + G G G G++G G
Sbjct: 223 GGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGG 268
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/69 (33%), Positives = 24/69 (34%)
Frame = +2
Query: 683 PPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXPRXXLDXCFFXXSPXPX 862
PP PP P P G P P +G PP PR SP P
Sbjct: 232 PPAGSPPPPPP-PKGSP----PLAGSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPP 283
Query: 863 PRGPXPPPP 889
P G PPPP
Sbjct: 284 PAGGSPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/69 (33%), Positives = 24/69 (34%)
Frame = +2
Query: 683 PPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXPRXXLDXCFFXXSPXPX 862
PP PP P P G P P +G PP PR SP P
Sbjct: 253 PPAGSPPPPPP-PKGSP----PLAGSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPP 304
Query: 863 PRGPXPPPP 889
P G PPPP
Sbjct: 305 PAGGSPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/69 (33%), Positives = 24/69 (34%)
Frame = +2
Query: 683 PPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXPRXXLDXCFFXXSPXPX 862
PP PP P P G P P +G PP PR SP P
Sbjct: 238 PPAGSPPPPPP-PKGSP----PLAGSGSPPPPPAAGSPPP---PRTGSPPPPPTGSPPPP 289
Query: 863 PRGPXPPPP 889
P G PPPP
Sbjct: 290 PAGGSPPPP 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,528,132
Number of Sequences: 27780
Number of extensions: 145497
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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