Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F17
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    70   5e-13

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 44/124 (35%), Positives = 54/124 (43%)
 Frame = +2

Query: 377 GPRKXXKXGVTVAXGVXLXXXFXXXXXXXXXXXXXXXXXXXXXXXTXATVLARAXAKXGF 556
           G  K  K GVTVA  V L   F                       T ATVL RA      
Sbjct: 76  GSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETV 135

Query: 557 EKISKGANPIEXXXGVXLAXXAVKXXLXGXSKXVTTPEXIAQVATXSANGXTXXGQLIAD 736
             ++ G NP++   G+ LA   V   L    + +TT E I+QVAT SANG T  G+L+A 
Sbjct: 136 RNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQVATISANGDTHIGELLAK 195

Query: 737 AXXR 748
           A  R
Sbjct: 196 AMER 199



 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 21/45 (46%), Positives = 27/45 (60%)
 Frame = +1

Query: 250 AXXVXFGADVXALXLXGVXXLAXAVAVXMGPKGXXVILXXSWGSP 384
           A  + FG D  A  L GV  LA AV+V +GPKG  V++   +GSP
Sbjct: 34  AKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSP 78



 Score = 34.7 bits (76), Expect = 0.017
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 735 MHXXGRXGWXXPVXDGXXLTDXLEIIEGMXFXXXSLSPYFI 857
           M   G+ G    V +G  ++D LE+ EGM F    +SPYFI
Sbjct: 197 MERVGKEG-VITVKEGRTISDELEVTEGMKFDRGYISPYFI 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,244,489
Number of Sequences: 5004
Number of extensions: 8478
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)