Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F17
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-6|AAK84594.1|  568|Caenorhabditis elegans Heat shock pr...    87   2e-17
L36035-1|AAA28077.1|  568|Caenorhabditis elegans HSP60 protein.        82   6e-16

>AC084153-6|AAK84594.1|  568|Caenorhabditis elegans Heat shock
           protein protein 60 protein.
          Length = 568

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 54/121 (44%), Positives = 59/121 (48%)
 Frame = +2

Query: 377 GPRKXXKXGVTVAXGVXLXXXFXXXXXXXXXXXXXXXXXXXXXXXTXATVLARAXAKXGF 556
           G  K  K GVTVA  + L   +                       T ATVLARA AK GF
Sbjct: 60  GSPKITKDGVTVAKSIDLKDKYQNLGAKLIQDVANKANEEAGDGTTCATVLARAIAKEGF 119

Query: 557 EKISKGANPIEXXXGVXLAXXAVKXXLXGXSKXVTTPEXIAQVATXSANGXTXXGQLIAD 736
           E I +G N +E   GV  A   V   L   SK VTTPE IAQVAT SANG T  G LI+D
Sbjct: 120 ESIRQGGNAVEIRRGVMNAVEVVVAELKKISKKVTTPEEIAQVATISANGDTVVGNLISD 179

Query: 737 A 739
           A
Sbjct: 180 A 180



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 25/45 (55%), Positives = 28/45 (62%)
 Frame = +1

Query: 250 AXXVXFGADVXALXLXGVXXLAXAVAVXMGPKGXXVILXXSWGSP 384
           A  V FGA+     L GV  LA AV+V MGPKG  VI+  SWGSP
Sbjct: 18  AKDVKFGAEGRQAMLVGVNLLADAVSVTMGPKGRNVIIEQSWGSP 62



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +3

Query: 771 VXDGXXLTDXLEIIEGMXFXXXSLSPYFINS 863
           V DG  L D LE+IEGM F    +SPYFI S
Sbjct: 192 VKDGKTLNDELELIEGMKFDRGYISPYFITS 222


>L36035-1|AAA28077.1|  568|Caenorhabditis elegans HSP60 protein.
          Length = 568

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 52/121 (42%), Positives = 57/121 (47%)
 Frame = +2

Query: 377 GPRKXXKXGVTVAXGVXLXXXFXXXXXXXXXXXXXXXXXXXXXXXTXATVLARAXAKXGF 556
           G  K  K GVTVA  + L   +                       T ATVL RA AK GF
Sbjct: 60  GSPKITKDGVTVAKSIDLKDKYQNLGAKLIQDVANKANEEAGDGTTCATVLTRAIAKEGF 119

Query: 557 EKISKGANPIEXXXGVXLAXXAVKXXLXGXSKXVTTPEXIAQVATXSANGXTXXGQLIAD 736
           E+ S   N +E   GV  A   V   L   SK VTTPE IAQVAT SANG T  G LI+D
Sbjct: 120 ERHSSRGNAVEIRRGVMNAVEVVVAELKKISKKVTTPEEIAQVATISANGDTVVGNLISD 179

Query: 737 A 739
           A
Sbjct: 180 A 180



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 25/45 (55%), Positives = 28/45 (62%)
 Frame = +1

Query: 250 AXXVXFGADVXALXLXGVXXLAXAVAVXMGPKGXXVILXXSWGSP 384
           A  V FGA+     L GV  LA AV+V MGPKG  VI+  SWGSP
Sbjct: 18  AKDVKFGAEGRQAMLVGVNLLADAVSVTMGPKGRNVIIEQSWGSP 62



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +3

Query: 771 VXDGXXLTDXLEIIEGMXFXXXSLSPYFINS 863
           V DG  L D LE+IEGM F    +SPYFI S
Sbjct: 192 VKDGKTLNDQLELIEGMKFDRGYISPYFITS 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,267,376
Number of Sequences: 27780
Number of extensions: 54942
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)