Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F16
         (941 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 770  PPPPPPP 790
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 770  PPPPPPP 790
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 346 PPPXPPPXXPPXXPP 390
           P   PPP  PP  PP
Sbjct: 42  PSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/38 (28%), Positives = 11/38 (28%)
 Frame = +2

Query: 674 PXXXPXXXXXXPXPXXXPXPXXXPPPXXXXXXPPPPPP 787
           P   P      P     P P   PPP      PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 346 PPPXPPPXXPPXXPP 390
           PPP  PP  PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 347 PPPXPPPXPPXXXPP 391
           P P PPP PP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 778 PPPPPPXXXXP 810
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.154    0.592 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,713
Number of Sequences: 438
Number of extensions: 8951
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)