Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F15
         (1231 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       31   1.9  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   5.7  
05_03_0258 - 11153709-11156090                                         29   9.9  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +1

Query: 775 GGGSXSFFFXXXGGGXXXTPPPXXHXXXFFXXXF--PPPP 888
           GGG   +     GGG   TPPP      +F   +  PPPP
Sbjct: 121 GGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPPPP 160


>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
            1211452-1211878,1212091-1213219,1213623-1213746,
            1214207-1214278,1215480-1215578,1215617-1215640,
            1215704-1215745,1215815-1215895,1215983-1216114,
            1216115-1216196,1216271-1216365,1218499-1218570,
            1218676-1218792,1219379-1219447,1219521-1219587,
            1219886-1220025
          Length = 1269

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 17/61 (27%), Positives = 18/61 (29%)
 Frame = +3

Query: 831  PPXPXSXXXLFXXXFPPPPQXXXXXXXXLXXFFFXXXPPPPAXPFXXXXXXXPTPPXXNT 1010
            PP P      +    PPPP         L        PPPP  P        P PP    
Sbjct: 570  PPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPN 629

Query: 1011 H 1013
            H
Sbjct: 630  H 630


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +3

Query: 876 PPPPQXXXXXXXXLXXFFFXXXPPPPAXPFXXXXXXXPTPP 998
           PPPP                  PPPP  P        PTPP
Sbjct: 34  PPPPPSRSSLPLDSLLLHLTAAPPPPQPPATRRPHPTPTPP 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,977,846
Number of Sequences: 37544
Number of extensions: 513446
Number of successful extensions: 960
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3782886900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)