Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F11
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    60   5e-10
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    60   5e-10

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 37/97 (38%), Positives = 43/97 (44%)
 Frame = +3

Query: 99  GRVRXXTVKXAAXXXIXXXXXXXXLXFXXXXXXCXXXAIXPTXPLRXXXAGFAXXLMRRL 278
           GRVR  T K A+   I        L F          AI  +  LR   AG+   LM+R+
Sbjct: 2   GRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRI 61

Query: 279 XXSXVRGXSIKLQXXXRXXRXXYVPEVSALEXDXXEV 389
               VRG S KLQ   R  +  YVPEVS LE D   V
Sbjct: 62  QRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNV 98


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 37/97 (38%), Positives = 43/97 (44%)
 Frame = +3

Query: 99  GRVRXXTVKXAAXXXIXXXXXXXXLXFXXXXXXCXXXAIXPTXPLRXXXAGFAXXLMRRL 278
           GRVR  T K A+   I        L F          AI  +  LR   AG+   LM+R+
Sbjct: 2   GRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRI 61

Query: 279 XXSXVRGXSIKLQXXXRXXRXXYVPEVSALEXDXXEV 389
               VRG S KLQ   R  +  YVPEVS LE D   V
Sbjct: 62  QRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINV 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,729
Number of Sequences: 5004
Number of extensions: 9998
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)