Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F11
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                             64   1e-10
10_07_0174 + 13815478-13815903                                         64   2e-10

>03_01_0066 - 537729-538163
          Length = 144

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 40/110 (36%), Positives = 50/110 (45%)
 Frame = +3

Query: 99  GRVRXXTVKXAAXXXIXXXXXXXXLXFXXXXXXCXXXAIXPTXPLRXXXAGFAXXLMRRL 278
           GRVR  TVK  +   I        L F          +I P+  LR   AGF+  LMRR+
Sbjct: 2   GRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRI 61

Query: 279 XXSXVRGXSIKLQXXXRXXRXXYVPEVSALEXDXXEVXPEHXGXVXXAGL 428
               VRG S+KLQ   R  R  +VP+ SALE D   V  E    +   G+
Sbjct: 62  QRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGM 111


>10_07_0174 + 13815478-13815903
          Length = 141

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 39/100 (39%), Positives = 46/100 (46%)
 Frame = +3

Query: 99  GRVRXXTVKXAAXXXIXXXXXXXXLXFXXXXXXCXXXAIXPTXPLRXXXAGFAXXLMRRL 278
           GRVR  TVK  +   I        L F          +I P+  LR   AGF   LMRR+
Sbjct: 2   GRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRI 61

Query: 279 XXSXVRGXSIKLQXXXRXXRXXYVPEVSALEXDXXEVXPE 398
               VRG S+KLQ   R  R  +VPE SALE +   V  E
Sbjct: 62  QRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKE 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,134,439
Number of Sequences: 37544
Number of extensions: 104839
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)