Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F10
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0347 + 2658545-2659309                                           30   2.8  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   3.8  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           27   4.2  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   6.6  

>12_01_0347 + 2658545-2659309
          Length = 254

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -1

Query: 669 GGGGXXXXRXFXXGGEPXDPPXKGXXRPRXXXGXGGGXGG 550
           GGGG    + F    +P   P  G  R     G GGG GG
Sbjct: 54  GGGGGNSSQRFSGNLKPTAAPIIGLSRKLGHGGGGGGGGG 93


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 559 PXXXPPPXPRPGXSLXXGVXXLPPXXKXPXXXXXPPP 669
           P   PPP P P  S+       PP    P     PPP
Sbjct: 618 PPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPP 654


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 27.1 bits (57), Expect(2) = 4.2
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +1

Query: 571 PPPXPRP-GXSLXXGVXXLPPXXKXPXXXXXPPP 669
           PPP P P G     G    PP    P     PPP
Sbjct: 303 PPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPP 336



 Score = 20.6 bits (41), Expect(2) = 4.2
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +1

Query: 550 PXXPXXXPPPXPRP 591
           P  P   PPP P P
Sbjct: 276 PPPPAGPPPPAPPP 289


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 669 GGGGXXXXRXFXXGGEPXDPPXKGXXRPRXXXGXGGGXGG 550
           GGGG         GG P  PP  G          GGG GG
Sbjct: 102 GGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGG 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,613,675
Number of Sequences: 37544
Number of extensions: 335307
Number of successful extensions: 1250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)