Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F08
         (938 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.43 
02_05_0686 - 30900748-30902167,30903442-30904742                       33   0.43 
07_03_1136 + 24218601-24218734,24218769-24219906                       30   2.3  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 19/54 (35%), Positives = 21/54 (38%)
 Frame = -3

Query: 573  PPXXFXGGGFXSXPPXPLRAPXXKKXGGXXXXPPPXXXXXXPPXXKPPXGXKXG 412
            PP    G G    PP P   P  +  GG    PPP      PP   PP G + G
Sbjct: 1123 PPPPIGGLGGHQAPPAP---PLPEGIGGVPP-PPPVGGLGGPPAPPPPAGFRGG 1172



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = -2

Query: 529  PPLKGPXXXKXGGXXXVPPPXXXXXKXPXXKTPXGVKXGXXXFPPXGXXXG 377
            PPL  P     G     PPP       P    P G   G    PP G   G
Sbjct: 1082 PPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGG 1132


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 18/50 (36%), Positives = 18/50 (36%)
 Frame = -2

Query: 538 PPXPPLKGPXXXKXGGXXXVPPPXXXXXKXPXXKTPXGVKXGXXXFPPXG 389
           PP PP KGP           PPP       P    P G K G    PP G
Sbjct: 336 PPPPPPKGPPPPPP-AKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384



 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -3

Query: 534 PPXPLRAPXXKKXGGXXXXPPPXXXXXXPPXXKPPXGXKXG 412
           PP P   P      G    PPP      PP   PP G K G
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP--PPGGKKGG 376


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 20/62 (32%), Positives = 20/62 (32%)
 Frame = +3

Query: 390 PXGGKXXXPXXTPXGVFXXGXXXXXXXGGGTXXXPPXFXXXGPLRGGXGGKXXPPXXXGX 569
           P GG    P   P G    G       GGG     P     G   GG GG    P   G 
Sbjct: 109 PGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGG---GGGGGALARPPGGGR 165

Query: 570 GG 575
           GG
Sbjct: 166 GG 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,999
Number of Sequences: 37544
Number of extensions: 227757
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)