Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F08
         (938 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    36   0.055
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    36   0.055
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    36   0.055
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.6  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    29   4.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 21/59 (35%), Positives = 21/59 (35%)
 Frame = -2

Query: 565 PXXXGGXXFPPXPPLKGPXXXKXGGXXXVPPPXXXXXKXPXXKTPXGVKXGXXXFPPXG 389
           P   GG   PP PP  G      GG    PPP       P    P G K G    PP G
Sbjct: 736 PPITGG---PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 21/59 (35%), Positives = 21/59 (35%)
 Frame = -2

Query: 565 PXXXGGXXFPPXPPLKGPXXXKXGGXXXVPPPXXXXXKXPXXKTPXGVKXGXXXFPPXG 389
           P   GG   PP PP  G      GG    PPP       P    P G K G    PP G
Sbjct: 736 PPITGG---PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 21/59 (35%), Positives = 21/59 (35%)
 Frame = -2

Query: 565 PXXXGGXXFPPXPPLKGPXXXKXGGXXXVPPPXXXXXKXPXXKTPXGVKXGXXXFPPXG 389
           P   GG   PP PP  G      GG    PPP       P    P G K G    PP G
Sbjct: 319 PPITGG---PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = -3

Query: 573 PPXXFXGGGFXSXPPXPLRAPXXKKXGGXXXXPPPXXXXXXPPXXKPP 430
           PP  F   G    PP P   P  +  GG    PPP      P    PP
Sbjct: 321 PPSRFGPPGMGGMPPPP--PPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = -3

Query: 573 PPXXFXGGGFXSXPPXPLRAPXXKKXGGXXXXPPPXXXXXXPPXXKPP 430
           PP  F   G    PP P   P  +  GG    PPP      P    PP
Sbjct: 331 PPSRFGPPGMGGMPPPP--PPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = -3

Query: 585 KKKXPPXXFXGGGFXSXPPXPLRAPXXKKXGGXXXXPPPXXXXXXPPXXKPP 430
           ++  PP  F  G      P P   P  +  G     PPP      PP  +PP
Sbjct: 22  ERPPPPDWFFPGPLRPWGPPP---PWHRNRGPPPFGPPPPWDRPPPPWRRPP 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,928,823
Number of Sequences: 27780
Number of extensions: 147669
Number of successful extensions: 331
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)