Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_F07
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 210 2e-55
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 124 1e-29
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 123 4e-29
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 89 1e-18
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 54 2e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 50 4e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 48 1e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 48 2e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 5e-06
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.040
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.16
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.49
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 4.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 210 bits (513), Expect = 2e-55
Identities = 104/143 (72%), Positives = 109/143 (76%)
Frame = +3
Query: 429 PRNXPSFSLRAPLNPKXNREKXXXIXFQTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 608
P P APLNPK NREK I F+TFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 609 GVSHTVPIYEGYALPHAILRLDLAGRXLTDXLMKILTERGXSFXTTXEREIVRDIKEXLC 788
GV+HTVPIYEGYALPHAI+RLDLAGR LTD LMKIL ERG +F TT EREIVRDIKE LC
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLC 217
Query: 789 YVALXFXQEMXXXXXXXSLXXXY 857
YVAL F QE+ SL Y
Sbjct: 218 YVALDFEQELQTAAQSSSLEKSY 240
Score = 146 bits (354), Expect = 4e-36
Identities = 65/76 (85%), Positives = 66/76 (86%)
Frame = +2
Query: 230 PRIVGRPRHQGVMVGMGQKXSYVGXEAXSKRGILTLKYPIEHGIVTNWDDXEKXWHHTFY 409
P IVGRPRH G+MVGMGQK SYVG EA SKRGILTLKYPIEHGIV NWDD EK WHHTFY
Sbjct: 32 PSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFY 91
Query: 410 NELRVAPEEXPVLLTE 457
NELRVAPEE P LLTE
Sbjct: 92 NELRVAPEEHPCLLTE 107
Score = 52.0 bits (119), Expect = 1e-07
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +1
Query: 148 VAALVVXXGSGMCKAGFAGAXAPRAVFPS 234
+AALV+ GSGMCKAGFAG APRAVFPS
Sbjct: 5 IAALVIDNGSGMCKAGFAGDDAPRAVFPS 33
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 124 bits (300), Expect = 1e-29
Identities = 59/123 (47%), Positives = 79/123 (64%)
Frame = +3
Query: 429 PRNXPSFSLRAPLNPKXNREKXXXIXFQTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 608
PR P+NP NREK F+ + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 609 GVSHTVPIYEGYALPHAILRLDLAGRXLTDXLMKILTERGXSFXTTXEREIVRDIKEXLC 788
GV+H VP+YE L H + RLD+AGR T L+ +L +G +F T + E VR++KE LC
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLC 217
Query: 789 YVA 797
YV+
Sbjct: 218 YVS 220
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Frame = +2
Query: 230 PRIVGRP--RHQGVMVGMGQKXSYVGXEAXSKRGILTLKYPIEHGIVTNWDDXEKXWHHT 403
P IVGRP R + + K VG EA + R +L +KYP+E+GI+ ++++ + W +T
Sbjct: 30 PSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYT 89
Query: 404 FYNELRVAPEEXPVLLTE 457
F+ +L++ P +LLTE
Sbjct: 90 FFEKLKIDPRGRKILLTE 107
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 151 AALVVXXGSGMCKAGFAGAXAPRAVFPS 234
A +V+ G+G K G+A PR FPS
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPS 31
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 123 bits (296), Expect = 4e-29
Identities = 58/130 (44%), Positives = 83/130 (63%)
Frame = +3
Query: 429 PRNXPSFSLRAPLNPKXNREKXXXIXFQTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 608
P P PL N+EK ++T N PA+ ++Q VL+LYAS RTTGIVL+ GD
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162
Query: 609 GVSHTVPIYEGYALPHAILRLDLAGRXLTDXLMKILTERGXSFXTTXEREIVRDIKEXLC 788
G++H+VPIY+G+++P AI + ++ GR +TD L L + G ++ E+EIVR+IKE C
Sbjct: 163 GLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCC 222
Query: 789 YVALXFXQEM 818
YVA F E+
Sbjct: 223 YVASDFRSEI 232
Score = 75.4 bits (177), Expect = 1e-14
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = +2
Query: 230 PRIVGRPRHQGVMVGMGQKXSYVGXEAXSKRGILTLKYPIEHGIVTNWDDXEKXWHHTFY 409
P VGR +H+ VM QK +VG EA + RG+L ++ PIE GI+ NW D E+ W + +
Sbjct: 36 PTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYS 95
Query: 410 N-ELRVAPEEXPVLLTE 457
+ +L PEE P+LLTE
Sbjct: 96 DQQLNTLPEEHPLLLTE 112
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 157 LVVXXGSGMCKAGFAGAXAPRAVFPS 234
+ + GSG KAGFAG P+ +FP+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPT 37
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 88.6 bits (210), Expect = 1e-18
Identities = 53/128 (41%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Frame = +3
Query: 462 PLNPKXNREKXXXIXFQTFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVS 617
PLNP NRE I F++FN +Y+A+QAVL+L AS + TG V+DSGDGV+
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVT 191
Query: 618 HTVPIYEGYALPHAILRLDLAGRXLTDXLMKILTERG--XSFXTTXEREIVRDIKEXLCY 791
H +P+ EGY + +I + LAGR +T + +L +R S T ER IKE CY
Sbjct: 192 HIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCY 246
Query: 792 VALXFXQE 815
V +E
Sbjct: 247 VCPDIVKE 254
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 293 YVGXEAXSKRGI-LTLKYPIEHGIVTNWDDXEKXWHHTFYNELRVAPEEXPVLLTE 457
++G +A K +L YPI HG + NWD E+ W + + LR PE+ LLTE
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTE 130
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 157 LVVXXGSGMCKAGFAGAXAPRAVFPS 234
+++ G+G K G+AG AP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/77 (32%), Positives = 46/77 (59%)
Frame = +3
Query: 588 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRXLTDXLMKILTERGXSFXTTXEREIVR 767
+V+DSG +H +P+ + A+ R+D+ G+ LT+ L ++++ R + E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR--KYNMMEETYIVN 216
Query: 768 DIKEXLCYVALXFXQEM 818
+IKE +CYV+ F ++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 50.0 bits (114), Expect = 4e-07
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +3
Query: 468 NPKXNREKXXXIXFQTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA 647
NP NR K F++ PA Y+A Q + +ASG+ T ++D G S IY+G+
Sbjct: 109 NPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFV 168
Query: 648 LPHAILRLDLAGRXLTDXLMKILTER 725
L +G + D L + L ++
Sbjct: 169 LQKGYQVQHFSGNAINDILAQTLRDK 194
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 329 LTLKYPIEHGIVTNWDDXEKXWHHTFYNELRVAPEEXPVLLTE 457
+ +K I +G V NWD W + +L+ P E P+L+TE
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE 105
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/90 (24%), Positives = 43/90 (47%)
Frame = +3
Query: 468 NPKXNREKXXXIXFQTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA 647
NP+ R++ F+ + PA Y+ QAV +A+ ++T +++D G + P+ +G
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLI 171
Query: 648 LPHAILRLDLAGRXLTDXLMKILTERGXSF 737
+ I + LAG L + ++ F
Sbjct: 172 IRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
Score = 31.1 bits (67), Expect = 0.21
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 248 PRHQGVMVGMGQKXSYVGXEAXSKRGI--LTLKYPIEHGIVTNWDDXEKXWHHTFYNELR 421
P + GV + + YV E I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 422 VAPEEXPVLLTEGS 463
V P E +++TE S
Sbjct: 97 VNPTEYAMMITEPS 110
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/100 (28%), Positives = 46/100 (46%)
Frame = +3
Query: 480 NREKXXXIXFQTFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 659
+RE F+ P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 660 ILRLDLAGRXLTDXLMKILTERGXSFXTTXEREIVRDIKE 779
+L L GR +T L +L E + ++ + DI E
Sbjct: 221 TQQLPLGGRYMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 468 NPKXNREKXXXIXFQTFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 641
NP R + F+ +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 126 NPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
Query: 642 YALPHAILRLDLAGRXLTDXLMKILTERGXSF 737
+ R+ G + L+K+ + SF
Sbjct: 186 ERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 275 MGQKXSYVGXEAXSKRGILTL-KYPIEHGIVTNWDDXEKXWHHTFYNELRVAPEEXPVLL 451
+ + + VG + + G ++ + P E +++NWD E+ +TF +L + E P+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 452 TE 457
TE
Sbjct: 121 TE 122
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.040
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 418 PCRPRGTSRPSH*GLPSTPRXTERXXPXSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCW 597
P P+G S P S P + P S S+ + PP P+ P + P +PP+
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR--SAPALPPLGNA 409
Query: 598 TPATVSPTPYP 630
+ + P P P
Sbjct: 410 SRTSTPPVPTP 420
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 466 STPRXTERXXPXSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDT 645
ST T P S S ST PP S S + + + SC T ++ PT +T T
Sbjct: 351 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVT 410
Query: 646 HSLTPS 663
++ P+
Sbjct: 411 PTVPPT 416
Score = 30.3 bits (65), Expect = 0.37
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 466 STPRXTERXXPXSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDT 645
ST T P S S ST PP S S + + SC T ++ PT +T T
Sbjct: 297 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT 356
Query: 646 HSLTPS 663
++ P+
Sbjct: 357 PTVPPT 362
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 502 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDT 645
SC+ ++ PP T S S P VPP S T +T P P ST T
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSST 158
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 502 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDT 645
SC+ ++ PP T S S P VPP S T +T P P ST T
Sbjct: 171 SCTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSST 215
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 502 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTP 660
SC+ ++ PP + + P + P VPP S TP T + ST ++ TP
Sbjct: 392 SCTTSTSIPPTGNSTTPVT----PTVPPTSSSTPLTTTNCT-TSTSVPYTSTP 439
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.49
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Frame = +1
Query: 460 LPSTPRXTERXXPXSCSKHSTRP---PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYP 630
+P P+ + + P P P T+P P T PV P S P+ P P P
Sbjct: 1011 VPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAP 1069
Query: 631 STRDTHSLTPS 663
S+ PS
Sbjct: 1070 SSEIPSIPAPS 1080
Score = 25.8 bits (54), Expect = 7.9
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Frame = +1
Query: 457 GLPSTPRXTERXX--PXSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP-TPY 627
G+P P +E S PP T+P P P VP + P +P +
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246
Query: 628 PSTRDTHSLTPS 663
PS S PS
Sbjct: 1247 PSVSTPRSSVPS 1258
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 550 PCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPSCV 669
P SR T+P+ S +P VSP PST ++ + V
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFV 301
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 526 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPS 633
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,970
Number of Sequences: 5004
Number of extensions: 45886
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -