Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_F06
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 42 1e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 40 5e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.014
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.17
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.30
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.39
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.52
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.69
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.7
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 3.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 8.5
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 8.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/57 (38%), Positives = 22/57 (38%)
Frame = -1
Query: 528 PPPPPXXGRVXVXXXXXXPPPPPPGXXXGXAXRXCXPXXPPPLAPXXXPXXPPPPPP 358
PPPPP V P PPP G P PPP P PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP-----PPPPPPGVAGAGPPPPPPPPP 783
Score = 33.5 bits (73), Expect = 0.042
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = +3
Query: 741 PPPPXXXPRXXPXAGGPPPPXGXXGXXXPPXPXGXXXXXXPXPPXXAXPPRXPPP 905
PPP P P PPP G PP P P PP PP PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP----PP--PPP 783
Score = 33.1 bits (72), Expect = 0.056
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 526 PPPPPXGXGXGXXXXXXPPPPPP 458
PPPPP G PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -1
Query: 528 PPPPPXXGRVXVXXXXXXPPPPPPGXXXGXAXRXCXP 418
PPPPP G V PPPPPP R P
Sbjct: 762 PPPPPPPG---VAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 29.9 bits (64), Expect = 0.52
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 666 PXXXPGGXXPXPPXXGXGGGXXXXXPPPP 752
P GG P PP G G PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 0.91
Identities = 21/76 (27%), Positives = 21/76 (27%)
Frame = -3
Query: 685 PPGXXXGXXXRPPPRGGXXXPPRPXGXXXAPPRXPXGXGXXGAAXXGXGXXXXPPPPPXG 506
PP P P PP P PP P G G G PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA-------GAGPPPPPPPPPAV 785
Query: 505 XGXGXXXXXXPPPPPP 458
G P P
Sbjct: 786 SAGGSRYYAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +2
Query: 599 PXXPXXXGGXXXPPPXGXXXXXPXAXPRGXXPXPPXXRAGGGXXXXXSXPPPGXXPXP 772
P P G PPP G P P P PP AGG P P P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP----PPPPAVSAGGSRYY---APAPQAEPEP 803
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -1
Query: 528 PPPPPXXGRVXVXXXXXXPPPPPPGXXXGXAXRXCXPXXPPPLA 397
PPP P G PPPPPP G A P PPP A
Sbjct: 752 PPPAPIMG--------GPPPPPPP---PGVAGAGPPPPPPPPPA 784
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 724 PPPXPXXGGXGXXPPGXXXGXXXRPPP 644
PPP P GG PP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/47 (27%), Positives = 13/47 (27%)
Frame = +1
Query: 763 PXXXPXXXXXPPPXAXXAXXXPPXRXXXGXXXXXPPPXXXXXXXPPP 903
P P P P PP G PPP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +1
Query: 541 PXXXXPPXXXPXRXGXGGGPXXXPXXGGGPPPPP 642
P P P G P G GPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -3
Query: 526 PPPPPXGXGXGXXXXXXPPPPPPRXXXXXGAPXXRXXXPPPPGPXXXA 383
P P P PPPPPP GA PPPP P A
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPP-PPGVAGA---GPPPPPPPPPAVSA 787
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 39.9 bits (89), Expect = 5e-04
Identities = 37/133 (27%), Positives = 39/133 (29%), Gaps = 12/133 (9%)
Frame = -3
Query: 724 PPPXPXXGGXGXXPPGXXXGXXXRPPPRGGXXXPPRPXGXXXAPPRXPXGXGXXGAAXXG 545
PP P G PP PPR P + P P AA
Sbjct: 254 PPIPPPSNGTVSSPPNS--------PPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305
Query: 544 XGXXXXPPPPPXGX--------GXGXXXXXXPPPPPP-RXXXXXG---APXXRXXXPPPP 401
PPPPP G G PPPPPP R P R PPPP
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Query: 400 GPXXXAXXXXPPP 362
+ PPP
Sbjct: 366 PRSAPSTGRQPPP 378
Score = 39.1 bits (87), Expect = 8e-04
Identities = 41/161 (25%), Positives = 42/161 (26%), Gaps = 13/161 (8%)
Frame = +3
Query: 462 GGGGGXXXXXXPXPXPXGGGGGXXXXPXPXXAAPXXPXPXGXRG-GAXXXPXGRGGXXXP 638
G G P P P G P +AP P P G P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 639 PRGGGRXXXPXXXPGGXXPXPPXXGXGGGXXXXXPP-----PPXXXPRXXPXA------G 785
P P PG P P G P PP P P A G
Sbjct: 388 PPA-----PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG 442
Query: 786 GPP-PPXGXXGXXXPPXPXGXXXXXXPXPPXXAXPPRXPPP 905
P PP PP P G P PP PP P P
Sbjct: 443 APAAPPLPPSAPIAPPLPAG-MPAAPPLPPAAPAPPPAPAP 482
Score = 37.5 bits (83), Expect = 0.003
Identities = 31/113 (27%), Positives = 33/113 (29%), Gaps = 9/113 (7%)
Frame = -3
Query: 652 PPPRGGXXXPPRPXGXXXAPPRXPXGXGXXGAAXXGXGXXXX----PPPPPXGXGXG--- 494
PPP PP P G G G PPPPP G
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
Query: 493 --XXXXXXPPPPPPRXXXXXGAPXXRXXXPPPPGPXXXAXXXXPPPAXKXXSS 341
PPPPPPR AP PP + PPPA S+
Sbjct: 353 LPPQGRSAPPPPPPR-----SAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Score = 35.9 bits (79), Expect = 0.008
Identities = 39/136 (28%), Positives = 41/136 (30%), Gaps = 14/136 (10%)
Frame = -1
Query: 723 PPPARXXGGXGXXPRGXAXGXXXXXPX------GGGXXXPPXXXGXXGPPPXXPXXGXXX 562
PPP+R G G + P G PP G PPP P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQ--GRSAPPPPPPRSAPST 372
Query: 561 GRXGXXXXXXXPPPPPXXGRVXVXXXXXXPPPPPPGXXX------GXAXRXCXPXXPPP- 403
GR PPP R PPP PG G A R P P P
Sbjct: 373 GRQ---------PPPLSSSRAV--SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421
Query: 402 -LAPXXXPXXPPPPPP 358
L P P PP PP
Sbjct: 422 SLPPSAPPSLPPSAPP 437
Score = 33.9 bits (74), Expect = 0.032
Identities = 40/148 (27%), Positives = 41/148 (27%), Gaps = 9/148 (6%)
Frame = -1
Query: 777 RXGXGXXPGGGXXXXXXXPPPARXXGGXGXXPRGXAXGXXXXXPXGGGXXXPPXXXGXXG 598
R G P G PPP PR A G P G PP
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPP-------PPPRSNAAGSIPLPPQGRSAPPPP------- 364
Query: 597 PPPXXPXXGXXXGRXGXXXXXXXPPPPPXX--GR-------VXVXXXXXXPPPPPPGXXX 445
PP P G PP PP GR + PP P P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 444 GXAXRXCXPXXPPPLAPXXXPXXPPPPP 361
A P PP L P P PP PP
Sbjct: 425 PSAPPSLPPSAPPSL-PMGAPAAPPLPP 451
Score = 33.1 bits (72), Expect = 0.056
Identities = 23/83 (27%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Frame = +3
Query: 666 PXXXPGGXXPXPPXXGXGGGXXXXXPPPPXXXPRXXPXAGGPPPPXGXXGXXXPPXPXGX 845
P P P G G PPPP PR P PP G PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP--PRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 846 XXXXXPXP----PXXAXPPRXPP 902
P P + PP PP
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPP 393
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 10/65 (15%)
Frame = +3
Query: 741 PPPPXXXPRXXPXAGG----------PPPPXGXXGXXXPPXPXGXXXXXXPXPPXXAXPP 890
PPPP R P G PPPP P P G P P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 891 RXPPP 905
R PPP
Sbjct: 374 RQPPP 378
Score = 31.1 bits (67), Expect = 0.23
Identities = 25/97 (25%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
Frame = -3
Query: 649 PPRGGXXXPPRPXGXXXAPPRXPXGXGXXGAAXXGXGXXXXPPPP--PXGXGXGXXXXXX 476
PP PP AP P G PP P P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVS---SPPNSPPRPIAPVSMNPAINSTSK 289
Query: 475 PPPPPPRXXXXXGAPXXRXXXPPPPGPXXXAXXXXPP 365
PP PPP A PPPP P PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
Score = 29.9 bits (64), Expect = 0.52
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +3
Query: 741 PPPPXXXPRXXPXAGGPPPPXGXXGXX---XPPXPXGXXXXXXPXPPXXAXPPRXPPP 905
PPPP R G PP G PP P P PP P PPP
Sbjct: 311 PPPPPPPSRRN--RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 29.5 bits (63), Expect = 0.69
Identities = 21/81 (25%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Frame = -1
Query: 597 PPPXXPXXGXXXGRXGXXXXXXXPPPPPXXGRVXVXXXXXXPPPPPPGXXXGXAXRXCXP 418
PPP P PP P + PP PP G P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Query: 417 XXPP--PLAPXXXPXXPPPPP 361
P P P P PP PP
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPP 471
Score = 29.5 bits (63), Expect = 0.69
Identities = 26/99 (26%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Frame = -3
Query: 724 PPPXPXXGGXGXXPPGXXXGXXXRPPPRGGXXXPPRPXGXXX-APPRXPXGXGXXGAAXX 548
PP P P G P P P P APP P G AA
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP---AAPP 448
Query: 547 GXGXXXXPPPPPXGXGXGXXXXXXPPPPPPRXXXXXGAP 431
PP P G P PPP AP
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 27.9 bits (59), Expect = 2.1
Identities = 30/125 (24%), Positives = 32/125 (25%), Gaps = 9/125 (7%)
Frame = -3
Query: 742 GXXXXXPPPXPXXGGXGXXPP----GXXXGXXXRPPP----RGGXXXPPRPXGXXXAPPR 587
G PPP G PP PPP R PP + P
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Query: 586 XPXGXGXXGAAXXGXGXXXXPPPPPXGXGXGXXXXXXPPPPPPRXXXXXGAPXXRXXXP- 410
P +A PP P G P PP AP P
Sbjct: 417 VPTPPSLPPSAPPSL-PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 409 PPPGP 395
PPP P
Sbjct: 476 PPPAP 480
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 556 PPXXXPXRXGXGGGPXXXPXXGGGPPPPP 642
PP P R G P PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -1
Query: 528 PPPPPXXGRVXVXXXXXXPPPPPPGXXXGXAXRXCXPXXPPPLAPXXXPXXPPPPPP 358
PP P + PP PP P PP P P PP P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP--LPPAAPAPPPAPAP 482
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.1 bits (77), Expect = 0.014
Identities = 35/137 (25%), Positives = 36/137 (26%), Gaps = 4/137 (2%)
Frame = +3
Query: 507 PXGGGGGXXXXPXPXXAAPXXPXPXGX----RGGAXXXPXGRGGXXXPPRGGGRXXXPXX 674
P G P P AAP P P G + P P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 675 XPGGXXPXPPXXGXGGGXXXXXPPPPXXXPRXXPXAGGPPPPXGXXGXXXPPXPXGXXXX 854
P P P G PPP P P G PP P PP P
Sbjct: 1173 APSSGIPPVPKPAAG---VPPVPPPSEAPPVPKPSVGVPPVPPPSTA---PPVPT-PSAG 1225
Query: 855 XXPXPPXXAXPPRXPPP 905
P P A P P P
Sbjct: 1226 LPPVPVPTAKAPPVPAP 1242
Score = 35.1 bits (77), Expect = 0.014
Identities = 32/118 (27%), Positives = 33/118 (27%), Gaps = 4/118 (3%)
Frame = +3
Query: 495 PXPXPXGGGGGXXXXPXPXXAAPXXPXPXGX----RGGAXXXPXGRGGXXXPPRGGGRXX 662
P P P G P P AAP P P G + P PP
Sbjct: 1132 PVPVPSGA----PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Query: 663 XPXXXPGGXXPXPPXXGXGGGXXXXXPPPPXXXPRXXPXAGGPPPPXGXXGXXXPPXP 836
P P P P G PPP P P AG PP P P P
Sbjct: 1188 VPPVPPPSEAPPVPKPSVG---VPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 32.3 bits (70), Expect = 0.097
Identities = 31/119 (26%), Positives = 31/119 (26%)
Frame = -3
Query: 721 PPXPXXGGXGXXPPGXXXGXXXRPPPRGGXXXPPRPXGXXXAPPRXPXGXGXXGAAXXGX 542
PP P G P P P G PP P APP G
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPV-PAPSGA---PPVPKPSVAAPPVPAPSSGIPPVPKPAA 1186
Query: 541 GXXXXPPPPPXGXGXGXXXXXXPPPPPPRXXXXXGAPXXRXXXPPPPGPXXXAXXXXPP 365
G PPP PP PPP P PP P P A P
Sbjct: 1187 GVPPV-PPPSEAPPVPKPSVGVPPVPPPSTAPP--VPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 28.7 bits (61), Expect = 1.2
Identities = 26/116 (22%), Positives = 29/116 (25%)
Frame = +3
Query: 555 AAPXXPXPXGXRGGAXXXPXGRGGXXXPPRGGGRXXXPXXXPGGXXPXPPXXGXGGGXXX 734
AAP P + + P PP P P P P
Sbjct: 1005 AAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP 1064
Query: 735 XXPPPPXXXPRXXPXAGGPPPPXGXXGXXXPPXPXGXXXXXXPXPPXXAXPPRXPP 902
P P P +G PP P PP P P A PP P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVP---APSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117
Score = 27.9 bits (59), Expect = 2.1
Identities = 31/128 (24%), Positives = 31/128 (24%), Gaps = 6/128 (4%)
Frame = -3
Query: 724 PPPXPXXGGXGXXPPGXXXGXXXRPPPRGGXXXPPRPXGXXXAPP------RXPXGXGXX 563
PPP P P G P P G PP P APP P
Sbjct: 1063 PPPVPAPSSEIPSIPAPS-GAPPVPAPSG---IPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118
Query: 562 GAAXXGXGXXXXPPPPPXGXGXGXXXXXXPPPPPPRXXXXXGAPXXRXXXPPPPGPXXXA 383
GA PP P PP P P PP P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 382 XXXXPPPA 359
P A
Sbjct: 1179 PPVPKPAA 1186
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +2
Query: 362 GGGGGXXGXXXGARGGGXXGXXXRXAXPXXXPGGGGG 472
GG GG G GARGGG G GG GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 359 GGGGGGXXGXXXGARGGGXXGXXXRXAXPXXXPGGGGG 472
GG GGG G G RGG G R G GG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +2
Query: 353 FXGGGGGGXXGXXXGARG--GGXXGXXXRXAXPXXXPGGGGGG 475
F GG GG G GARG GG G GG GG
Sbjct: 28 FGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +3
Query: 741 PPPPXXXPRXXPXAGGPPPPXGXXGXXXPPXPXGXXXXXXPXPPXXAXPPRXPPP 905
P P P P + PP PP P PP A PP PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQ----MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 741 PPPPXXXPRXXPXAGGPPPPXGXXGXXXPPXP 836
PPPP P P PP P G PP P
Sbjct: 1708 PPPPMSVP---PPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Frame = -3
Query: 526 PPPPPXGXGXGXXXXXXPPPPP---PRXXXXXGAPXXRXXXPPPPGPXXXAXXXXPP 365
PP P PPPPP P P PPPP P A P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +3
Query: 741 PPPPXXXPRXXPXAGGPPPPXGXXGXXXPPXP 836
PPPP P PPPP P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.39
Identities = 28/97 (28%), Positives = 28/97 (28%)
Frame = +1
Query: 394 GGQGGGXXRXAXPXRPPXXXPGGGGGGGXXXXXDRXPXPXGGGGGXXXXPXXXXPPXXXP 573
G GGG P PGG GG G GG GG P
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG--------GPGGFEG 235
Query: 574 XRXGXGGGPXXXPXXGGGPPPPPXGXXGRXXXRXXPG 684
G GGGP GG P G G PG
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 29.9 bits (64), Expect = 0.52
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +2
Query: 359 GGGGGGXXGXXXGARGGGXXGXXXRXAXPXXXPGGGGGG 475
GGG GG G G GGG G PGG GGG
Sbjct: 227 GGGPGGFEGGPGGF-GGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 29.1 bits (62), Expect = 0.91
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +2
Query: 353 FXGGGGGGXXGXXXGARGGGXXGXXXRXAXPXXXPGGGGGG 475
F G GG G G GGG G PGG GGG
Sbjct: 210 FGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 359 GGGGGGXXGXXXGARGGGXXGXXXRXAXPXXXPGGGGGG 475
GG GGG G G G G G GG GGG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 365 GGGGXXGXXXGARGGGXXGXXXRXAXPXXXPGGGGG 472
GG G G G GGG G PGG GG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 26.6 bits (56), Expect = 4.8
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = +3
Query: 324 PPXXXGEEXXFXAGGGXXXXAXXXGPGGGGKXXRXXGAPXXLXXRGGGGGGXXXXXXPXP 503
PP G F GG G GGG G GG GGG P
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG-GP 258
Query: 504 XPXGGGGGXXXXP 542
GGG G P
Sbjct: 259 GGFGGGPGGHGGP 271
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 577 RXGXGGGPXXXPXXGGGPPPPPXGXXG 657
R GGG GGPPP P G G
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGG 209
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 420 PXXPPPLAPXXXPXXPPPPPP 358
P PPP P PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 29.5 bits (63), Expect = 0.69
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 526 PPPPPXGXGXGXXXXXXPPPPP 461
PPPPP G PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 526 PPPPPXGXGXGXXXXXXPPPPPP 458
PPPPP G PPPPPP
Sbjct: 10 PPPPPP---PGFEPPSQPPPPPP 29
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 741 PPPPXXXPRXXPXAGGPPPP 800
PPPP P P + PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 475 PPPPPPRXXXXXGAPXXRXXXPPPPG 398
PPPPPP P + PPPPG
Sbjct: 9 PPPPPPPPGFE---PPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 420 PXXPPPLAPXXXPXXPPPPPP 358
P PP P P PPPPPP
Sbjct: 12 PPPPPGFEPPSQP--PPPPPP 30
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.69
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Frame = -1
Query: 474 PPPPPPGXXXGXAX-----------RXCXPXXPPPLAPXXX---PXXPPPPPP 358
PPPPPP A R P PP P P PPPPPP
Sbjct: 192 PPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Frame = -3
Query: 475 PPPPPPRXXXXXGAPXXRXXXP-PPPGPXXXA 383
PPPPPP G P PP GP A
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGA 1913
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/67 (23%), Positives = 18/67 (26%)
Frame = -1
Query: 597 PPPXXPXXGXXXGRXGXXXXXXXPPPPPXXGRVXVXXXXXXPPPPPPGXXXGXAXRXCXP 418
PPP P G PP P G + P P P P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMP 1941
Query: 417 XXPPPLA 397
PP +A
Sbjct: 1942 NAPPSVA 1948
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -3
Query: 583 PXGXGXXGAAXXGXGXXXXPPPPPXGXGXGXXXXXXPPP 467
P G G A G PPPP G G G PPP
Sbjct: 109 PLGQAPVGLAGPVRGVGYTAPPPPAGFGRG-----APPP 142
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 741 PPPPXXXPRXXPXAGGPPPPXGXX-GXXXPPXPXGXXXXXX-PXPPXXAXPPRXPPP 905
PPPP P PPPP G PP P P PP P PP
Sbjct: 208 PPPPM---HHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -1
Query: 528 PPPPPXXGRVXVXXXXXXPPPPPPG 454
PPPPP PPPP G
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVG 932
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 420 PXXPPPLAPXXXPXXPPPPP 361
P P+ P P PPPPP
Sbjct: 275 PMMNVPMGPGGAPLVPPPPP 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.157 0.572
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,361
Number of Sequences: 5004
Number of extensions: 48294
Number of successful extensions: 500
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
- SilkBase 1999-2023 -