Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_F03
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.018
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.17
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.018
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPPP 595
PPPP G PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.097
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPPP 595
PPPP PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPPP 595
PPPP G PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPPP 595
PPPP PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 29.1 bits (62), Expect = 0.90
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -2
Query: 366 PPPXXXFFXXGXPXPPPXGXPPXXXXXFXPPPXXXPXXXXFXFRPXPP 223
PPP P P P PP PPP P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPPP 595
PPP G PPPPPPP
Sbjct: 752 PPPAPIMGGP--PPPPPPP 768
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPPP 595
PPPP PPPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPPP 595
PPPP G PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPPP 595
PPPP PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 367 PPPPXXFFXXGGPXPPPXXG 308
PPPP F P PPP G
Sbjct: 12 PPPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 559 PXPXGGGXFXXXKTPPPPPXXXXKKKK 479
P P G + PPPPP KK+K
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGYVKKRK 37
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/57 (28%), Positives = 18/57 (31%)
Frame = +2
Query: 575 PPPPPPPXXXXXXXXXXRXRSXPXXGGXXFLSPKXGPPXXXPFCXPPXXXPXPXXXP 745
PPPPPPP +SP+ PP P P P P P
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEI-PPTYTPKQADPLPAPPPPPPP 244
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 473 GXFFFFXSXXGGGGGGFSXXKXPPPPXXXG 562
G F GGG GGF PPP G
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGG 206
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Frame = +2
Query: 503 GGGGGGFSXXKXPPPP--XXXGXXXXPP-----PPPPPXXXXXXXXXXRXRSXPXXGGXX 661
G G S PPPP G PP PPPPP R P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP----PRSAPSTGRQPPPLSSSR 383
Query: 662 FLSPKXGPPXXXPFCXPPXXXP 727
+S PP P P P
Sbjct: 384 AVSNPPAPPPAIPGRSAPALPP 405
Score = 23.8 bits (49), Expect(2) = 4.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 575 PPPPPPP 595
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 21.0 bits (42), Expect(2) = 4.8
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +2
Query: 539 PPPPXXXGXXXXPPPPPP 592
P PP G PP PP
Sbjct: 255 PIPPPSNGTVSSPPNSPP 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.152 0.521
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,872
Number of Sequences: 5004
Number of extensions: 25817
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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