Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F02
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    28   1.5  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   6.0  

>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 424 GNKAQGXPLYNAIVWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGL-PLS 573
           G   QG PL  ++     R S   D  L  VP  T N+   + LC + PL+
Sbjct: 246 GYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLN 296


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 526 TRNKNYLKPLCGLPLSPYFXAVKLRWLXDHVD 621
           T   N +K + GLP+ P F   K+R+  D  +
Sbjct: 543 TNISNAMKAVNGLPIHPLFKKSKIRYAPDRCE 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,424
Number of Sequences: 5004
Number of extensions: 32255
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)