Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F02
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.3  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 729 IXDXXPAIWTTCQVPYDPT 673
           + D  P IW   +  YDPT
Sbjct: 93  LIDNKPEIWVLLEAKYDPT 111


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 729 IXDXXPAIWTTCQVPYDPT 673
           + D  P IW   +  YDPT
Sbjct: 93  LIDNKPEIWVLLEAKYDPT 111


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 553 MALGNFCFLFCLAP 512
           +A+ NF  +FC++P
Sbjct: 94  LAISNFLMMFCMSP 107


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 485 LPLLTSFLTRCQTKQETKIT*SHYVVF 565
           LP+ TS+ +    +QE K + SHY ++
Sbjct: 439 LPVHTSYKSGLNLEQEKKDSISHYHLY 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,084
Number of Sequences: 438
Number of extensions: 2524
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)