Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F01
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0067 - 20460206-20460703,20461255-20461530                       27   2.7  
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061...    28   8.2  

>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 26.6 bits (56), Expect(2) = 2.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 810 GAPXPXXFFXXGAPPPP 760
           G P P  +F  G PPPP
Sbjct: 13  GPPPPPQYFQAGPPPPP 29



 Score = 21.8 bits (44), Expect(2) = 2.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 777 GAPPPPXXGXPP 742
           G PPPP    PP
Sbjct: 44  GQPPPPQAAPPP 55


>09_04_0130 -
           14905044-14905505,14905865-14905933,14906000-14906104,
           14906625-14906690,14907080-14907268,14907353-14907439,
           14907597-14908118
          Length = 499

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 743 GGXPXXGGGGAPXKKXXXGXGAPPPP 820
           GG    GGG A  +    G GAP PP
Sbjct: 221 GGGTASGGGAAQPQAGAAGGGAPAPP 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,276,366
Number of Sequences: 37544
Number of extensions: 351100
Number of successful extensions: 1093
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)