Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F01
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific ...    29   3.2  
Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   5.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   5.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   5.5  
U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific ...    28   9.7  
AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...    28   9.7  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 819 GGGGAPXPXXFFXXGAPPPP--XXGXPP 742
           G GG P P   F  G PPPP    G PP
Sbjct: 79  GPGGIPPPPPMFAGGIPPPPPMMGGIPP 106



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 813 GGAPXPXXFFXXGAPPPPXXGXPP 742
           GG P P        PPPP  G PP
Sbjct: 92  GGIPPPPPMMGGIPPPPPMFGAPP 115


>U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific
           family, class qprotein 4 protein.
          Length = 373

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +2

Query: 743 GGXPXXGGGGAPXKKXXXGXGAPPP 817
           GG P  GGGG    K   G GAPPP
Sbjct: 24  GGGPAGGGGG---NKSAGGGGAPPP 45


>Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical
           protein K07F5.11 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +2

Query: 743 GGXPXXGGGGAPXKKXXXGXGAPPP 817
           GG P  GGGGA       G GAPPP
Sbjct: 24  GGGPAGGGGGA---SKVGGAGAPPP 45


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 816 GGGAPXPXXFFXXGAPPPPXXGXPP 742
           G G+P P      G+PPPP  G PP
Sbjct: 251 GSGSPPPPP--AAGSPPPPRTGSPP 273


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 816 GGGAPXPXXFFXXGAPPPPXXGXPP 742
           G G+P P      G+PPPP  G PP
Sbjct: 272 GSGSPPPPP--AAGSPPPPRTGSPP 294


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 816 GGGAPXPXXFFXXGAPPPPXXGXPP 742
           G G+P P      G+PPPP  G PP
Sbjct: 257 GSGSPPPPP--AAGSPPPPRTGSPP 279


>U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific
           family, class qprotein 2 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 743 GGXPXXGGGGAPXKKXXXGXGAPPPP 820
           GG P  GGGGA       G GA PPP
Sbjct: 24  GGGPAGGGGGA----SKVGGGAAPPP 45


>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 761 GGGGAPXKKXXXGXGAPPP 817
           G GGAP  +   G GAPPP
Sbjct: 130 GPGGAPVYRAGFGRGAPPP 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,790
Number of Sequences: 27780
Number of extensions: 259875
Number of successful extensions: 904
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)