Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_E23
         (1017 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   5.6  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = +1

Query: 790 PXPNPHXPXXPLPXHXXVEPPXXPXPPLHSAPXXXSTPHPXPXXXPPXSLAXPTIT 957
           P PN   P  PLP    +     P  PL   P   + P P         L+  T++
Sbjct: 108 PLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVPETNCHKESPLSDETVS 163


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
 Frame = +1

Query: 790 PXPNPHXPXXPLPXHXXVEPPXXPXPPLHSAPXXXSTPH---PXPXXXPPXSLA 942
           P   P  P    P    + PP  P  P+ S P   S P    P P   PP  L+
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLS 207



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
 Frame = +1

Query: 847 PPXXPXPPLH--------SAPXXXSTPHPXPXXXPPXSLAXPTITXSL 966
           PP  P PP          SAP   S P P P   PP     P I  SL
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSL 171



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +1

Query: 796 PNPHXPXXP-LPXHXXVEPPXXPXPPLHSAPXXXSTPHPXPXXXPPXSLAXPTIT 957
           P    P  P LP      PP  P PPL  AP   ++  P     PP   A P +T
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRP-SSFAPPAGHA-PNVT 232


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
 Frame = +2

Query: 530  TTCXXIXPPXXXPXTPQGXAXXXPXXPX-PXP*RRXP*XPSXXPXPPXPSPSXXPQ-KNP 703
            +T   +  P   P  P+  +      P  P P    P  P+    PP P+PS  P    P
Sbjct: 1038 STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097

Query: 704  XXAXP 718
              A P
Sbjct: 1098 SVAAP 1102



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
 Frame = +1

Query: 790  PXPNPHXPXXPLPXHXXVEPPXXPXP---PLHSAPXXXSTPHPXPXXXPP---XSLAXPT 951
            P P P     P+P      PP  P P   P    P   + P P P   PP    S+A P 
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPV-PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151

Query: 952  I 954
            +
Sbjct: 1152 V 1152


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
 Frame = +2

Query: 551  PPXXXPXTPQGXAXXXPXXP-XPXP*RRXP*XPSXXPXPPXPSPSXXPQKNPXXAXP 718
            P    P  PQ  A      P  P P    P  PS  P P  P PS  P   P  + P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP-PSAPPPPLPASSAP 1741



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = +2

Query: 551  PPXXXPXTPQGXAXXXPXXPXPXP*RRXP*XPSXXPXPPXPSPSXXPQKNP 703
            PP     TP       P  P   P    P  P   P PP P+ S     NP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP---MPAGPPSAPPPPLPASSAPSVPNP 1746


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +1

Query: 820 PLPXHXXVEPPXXPXPPLHSAPXXXSTPHPXPXXXPPXSLAXP 948
           PLP      PP  P PP+  AP   +     P   PP     P
Sbjct: 492 PLPPTTFA-PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPP 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,041
Number of Sequences: 5004
Number of extensions: 20872
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)