Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_E21
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 90 3e-19
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 61 2e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 54 2e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 44 2e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 34 0.030
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 32 0.091
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 30 0.37
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 90.2 bits (214), Expect = 3e-19
Identities = 45/67 (67%), Positives = 47/67 (70%)
Frame = +3
Query: 471 LNPKXXRXXXXXXXFEXFXXPXMYVAIQAVXSLYASGRTXGIVLXSGXGVSHTVPIXEGX 650
LNPK R FE F P YVAIQAV SLYASGRT GIVL SG GV+HTVPI EG
Sbjct: 110 LNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGY 169
Query: 651 ALPHAIL 671
ALPHAI+
Sbjct: 170 ALPHAIM 176
Score = 79.4 bits (187), Expect = 6e-16
Identities = 39/76 (51%), Positives = 41/76 (53%)
Frame = +2
Query: 254 PAXXXVXVGXGXXXSYVGXXAXXXXGXLTLKYPIEXGXVXNWXXXXXXWXXTFYNXLRVA 433
P + VG G SYVG A G LTLKYPIE G V NW W TFYN LRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 434 PEXXPVLLTEGSPQPQ 481
PE P LLTE P+
Sbjct: 98 PEEHPCLLTEAPLNPK 113
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/48 (52%), Positives = 26/48 (54%)
Frame = +1
Query: 676 LXLXGRXLXDXLMKILXEXGYSXXTXXXRXIVXDXKEXXXXVALXXXQ 819
L L GR L D LMKIL E GY+ T R IV D KE VAL Q
Sbjct: 178 LDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQ 225
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +3
Query: 471 LNPKXXRXXXXXXXFEXFXXPXMYVAIQAVXSLYASGRTXGIVLXSGXGVSHTVPIXEGX 650
+NP R FE + +YVAIQAV SLYA G + G+V+ SG GV+H VP+ E
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 651 ALPHAI 668
L H +
Sbjct: 170 VLNHLV 175
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 302 VGXXAXXXXGXLTLKYPIEXGXVXNWXXXXXXWXXTFYNXLRVAPEXXPVLLTEGSPQP 478
VG A L +KYP+E G + ++ W TF+ L++ P +LLTE P
Sbjct: 54 VGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNP 112
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +3
Query: 513 FEXFXXPXMYVAIQAVXSLYASGRTXGIVLXSGXGVSHTVPIXEGXALPHAI 668
+E P + ++Q V +LYAS RT GIVL G G++H+VPI +G ++P AI
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 299 YVGXXAXXXXGXLTLKYPIEXGXVXNWXXXXXXWXXTFYN-XLRVAPEXXPVLLTE 463
+VG A G L ++ PIE G + NW W + + L PE P+LLTE
Sbjct: 57 FVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 471 LNPKXXRXXXXXXXFEXFXXPXMYVAIQAVXSLYASGRT--------XGIVLXSGXGVSH 626
LNP R FE F +Y+A+QAV +L AS + G V+ SG GV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 627 TVPIXEGXALPHAI 668
+P+ EG + +I
Sbjct: 193 IIPVAEGYVIGSSI 206
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 338 TLKYPIEXGXVXNWXXXXXXWXXTFYNXLRVAPEXXPVLLTEGSPQP 478
+L YPI G + NW W + + LR PE LLTE P
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 33.9 bits (74), Expect = 0.030
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 474 NPKXXRXXXXXXXFEXFXXPXMYVAIQAVXSLYASGR--TXGIVLXSGXGVSHTVPIXEG 647
NP R FE + P + I + S Y + + + GIVL G SH +P+ G
Sbjct: 126 NPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 32.3 bits (70), Expect = 0.091
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +3
Query: 474 NPKXXRXXXXXXXFEXFXXPXMYVAIQAVXSLYASGRTXGIVLXSGXGVSHTVPIXEGXA 653
NP+ R FE P Y+ QAV +A+ ++ +++ G + P+ +G
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLI 171
Query: 654 LPHAI 668
+ I
Sbjct: 172 IRKGI 176
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 335 LTLKYPIEXGXVXNWXXXXXXWXXTFYNXLRVAPEXXPVLLTEGSPQP 478
+ +K I G V NW W L+ P P+L+TE P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +3
Query: 474 NPKXXRXXXXXXXFEXFXXPXMYVAIQAVXSLYASGRTXGIVLXSGXGVSHTVPIXEGXA 653
NP R FE P Y+A Q + +ASG+ ++ G S I +G
Sbjct: 109 NPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFV 168
Query: 654 L 656
L
Sbjct: 169 L 169
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 513 FEXFXXPXMYVAIQAVXSLYASGRTXGIVLXSGXGVSHTVPIXEG 647
FE P +A + + LYA G G+V+ G + PI +G
Sbjct: 170 FEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,862
Number of Sequences: 5004
Number of extensions: 11242
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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