Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_E19
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    31   1.4  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    30   1.9  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    30   1.9  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   5.8  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    28   7.7  

>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +3

Query: 231 PPGPP*RSLSPATXXTCSAPSGPXTSTXXTSSAPXPXG 344
           PPGPP     P        P  P T+T  +   P P G
Sbjct: 218 PPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAG 255


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 195 AXPAASQXXRTEPPGPP*RSLSPATXXTCSAPSGPXTSTXXTSSAPXP 338
           A PA +    T P  P   + S     T  AP+GP   T   ++AP P
Sbjct: 243 ARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAP 290


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 195 AXPAASQXXRTEPPGPP*RSLSPATXXTCSAPSGPXTSTXXTSSAPXP 338
           A PA +    T P  P   + S     T  AP+GP   T   ++AP P
Sbjct: 243 ARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAP 290


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 195 AXPAASQXXRTEPPGPP*RSLSPATXXTCSAPSGPXTSTXXTSSAPXP 338
           A PA +    T P  P   + S     T  AP+GP   T   ++AP P
Sbjct: 243 ARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAP 290


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 192 GAXPAASQXXRTEPPGPP*RSLSPATXXTCSAPSGPXTSTXXTSSAPXPXGS 347
           G  P+        PPGPP  S +P T      P  P   T  T   P P G+
Sbjct: 189 GNTPSRGGVGEAGPPGPPGTSGNPGTDGAPGNPGAPGQVT-ETPGTPGPAGA 239


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 201  PAASQXXRTEPPGPP*RSLSPATXXTCSAPSGPXTSTXXTSSAPXP 338
            PA+S    + P  P    ++P++    S+PS P  ST   S  P P
Sbjct: 1621 PASSPSAPSIPSIPSTLPVAPSSSSVPSSPSAPSESTSTVSETPAP 1666


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +3

Query: 192 GAXPAASQXXRTEPPGPP*RSLSPATXXTCSAPSGPXTSTXXTSSAPXPXGS 347
           G  P+        PPGPP  + +P T      P  P   T  T   P P G+
Sbjct: 199 GNTPSGGGEGPAGPPGPPGPAGNPGTDGAPGNPGAPGQVT-ETPGTPGPAGA 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,395,679
Number of Sequences: 27780
Number of extensions: 167605
Number of successful extensions: 461
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)