Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_E15
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   186   5e-48
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    28   1.9  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    27   4.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   5.9  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    26   7.8  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  186 bits (452), Expect = 5e-48
 Identities = 95/190 (50%), Positives = 137/190 (72%), Gaps = 2/190 (1%)
 Frame = +2

Query: 197 IKGRLAGAVKGHGLLKXXADALQVXFRMILSKIIEXKTLMGEVMKEAAFSLAEAKFTTGD 376
           +K RL GA  GH LLK  ++AL+  FR I+  I + K  MG VM+ AAFS+AE  F  G+
Sbjct: 19  MKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGRVMQIAAFSMAEVGFAMGN 78

Query: 377 -FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DTYELAGLARGGQQLAKLKK 550
             N  + Q+V + ++++RSK++N++GV LP FE   D S D ++L GL +GGQQ+ K ++
Sbjct: 79  NINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDDFQLTGLGKGGQQIQKARQ 138

Query: 551 NFQSAVKLLVELASLQTSFVTLDEVIKITXRRVNAIEHVIIPRLERTLAYIISXLDELER 730
            ++ AV+ LV+LAS Q++FV L +V+++T RRVN+IEH+IIPRLE T+ YI S L+ELER
Sbjct: 139 VYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIPRLENTIKYIESELEELER 198

Query: 731 EEFYRLKKIQ 760
           E+F RLKK+Q
Sbjct: 199 EDFTRLKKVQ 208


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 580 DQKLHSALEVLLQLCKLLPTTSQTSQLIGIRTILV*LKDWEG 455
           DQ   + LE L++LC L  TT ++   +    I + LKD++G
Sbjct: 378 DQPNLTLLEYLIRLCALESTTQESVLQLPDEQIALYLKDYQG 419


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 474 HTRMVLIPMSWLVWLVVG 527
           +T + LI   WL+WLV+G
Sbjct: 222 YTGIALIAQHWLIWLVLG 239


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 343  ESSFFHHFTHKGFXLNDFAQDHTEPHL 263
            + SF+ HF H GF +  +     + HL
Sbjct: 1516 KKSFYKHFLHSGFPVESYLHKVLDNHL 1542


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 514 GSWWA-AACKAEEELPERCEAFGRVSFTADFI 606
           G+WW   +C  EEE+    +AFG    T + I
Sbjct: 304 GTWWLDVSCPKEEEIRVLAKAFGIHPLTVEDI 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,080
Number of Sequences: 5004
Number of extensions: 44556
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)