Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_E12
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    76   8e-15
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    48   2e-06
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    41   2e-04

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 75.8 bits (178), Expect = 8e-15
 Identities = 32/48 (66%), Positives = 38/48 (79%)
 Frame = +3

Query: 324 WDEGVXXMSVGXRAKLTCSPDYAYGQXGXPGVIPPNSTLIFDVXLLRL 467
           WDEGV  MS+G +AKLT +PDY YG  G PG+IPPNSTL+FDV LL +
Sbjct: 60  WDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 23/48 (47%), Positives = 28/48 (58%)
 Frame = +3

Query: 324 WDEGVXXMSVGXRAKLTCSPDYAYGQXGXPGVIPPNSTLIFDVXLLRL 467
           WD GV  M  G   K+T     AYG    PG IP NSTL+F+V L+R+
Sbjct: 314 WDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = +3

Query: 324 WDEGVXXMSVGXRAKLTCSPDYAYGQXGXPGVIPPNSTLIFDVXLL 461
           WD G+  M VG    +      AYG    PG IP NS L+FDV LL
Sbjct: 315 WDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,728
Number of Sequences: 5004
Number of extensions: 16049
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)