Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_E08
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    34   0.001
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +2

Query: 425 VDLEGXYELDGXVLILPIRGKGXLHAALRKVXISVEADLGVET-GADGVXHWTVKDWXHN 601
           VD    Y+++G VL+LP+RG G  +  +    +    D+  E    +G  +  +K     
Sbjct: 125 VDFVADYKIEGKVLLLPVRGAGKSNITM--YDLKSHNDIYCEKYEKNGETYLRIKKHAVK 182

Query: 602 YQLKDQSXLELDNLFDGNDVLAQAAKXLI 688
           +    +  L  +NLFDGN  L +     I
Sbjct: 183 FN-PAKVKLRFENLFDGNKELGEQMNRFI 210


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 538 ISFH*YXNLP*CSVKXSFTPNREDKN 461
           I FH Y N   C     F+P+ E+++
Sbjct: 361 IQFHLYINTAPCGDARIFSPHEENES 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,623
Number of Sequences: 438
Number of extensions: 1680
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)