Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D24
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    36   0.056
01_06_0824 - 32243495-32244319,32244449-32244859                       35   0.074
05_06_0044 - 25150322-25151260                                         33   0.30 
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869     31   0.92 
11_01_0767 + 6438648-6438809,6439146-6440000                           31   1.6  

>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 35.5 bits (78), Expect = 0.056
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +2

Query: 635 NAIYFXXAWXSXFDXRLTSXRDFYVSQXXXIXVPMMYTRGXYXYGXXAVLNAH*LXYLTG 814
           NA+YF  AW   FD   T   +F++     +  P M TR          L    L YL G
Sbjct: 500 NALYFKGAWAEKFDVSKTEDGEFHLLDGESVQAPFMSTRKKQYLSSYDSLKVLKLPYLQG 559



 Score = 31.9 bits (69), Expect = 0.69
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 635 NAIYFXXAWXSXFDXRLTSXRDFYVSQXXXIXVPMMYT 748
           NA+YF  AW   FD   T   +F++     +  P M T
Sbjct: 248 NALYFKGAWTEKFDASKTKDGEFHLLDGKSVQAPFMST 285


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 635 NAIYFXXAWXSXFDXRLTSXRDFYVSQXXXIXVPMMYTRGXYXY 766
           NA+YF   W S FD R TS   FY+     +  P M + G + Y
Sbjct: 176 NALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFM-SSGKWQY 218


>05_06_0044 - 25150322-25151260
          Length = 312

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 626 FSFNAIYFXXAWXSXFDXRLTSXRDFYVSQXXXIXVPMM 742
           F  N++YF   W   F   LT   DF+VS    + VP M
Sbjct: 79  FLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117


>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
          Length = 258

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 18/63 (28%), Positives = 23/63 (36%)
 Frame = +2

Query: 635 NAIYFXXAWXSXFDXRLTSXRDFYVSQXXXIXVPMMYTRGXYXYGXXAVLNAH*LXYLTG 814
           NA+YF  AW   FD   T   +F +     +  P M T           L    L Y  G
Sbjct: 40  NALYFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFMSTSKKQYLSSYDSLKVLKLPYQKG 99

Query: 815 RXI 823
           R +
Sbjct: 100 RDL 102


>11_01_0767 + 6438648-6438809,6439146-6440000
          Length = 338

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 635 NAIYFXXAWXSXFDXRLTSXRDFYVSQXXXIXVPMM 742
           NAIYF   W + FD   T+ R+F       + VP M
Sbjct: 93  NAIYFKGEWLAPFDKSDTAEREFRRLDGSSVEVPFM 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,879,153
Number of Sequences: 37544
Number of extensions: 73837
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)