Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_D23
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 45 7e-05
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 39 0.004
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 33 0.29
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 30 2.1
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 29 4.8
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 28 8.4
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 45.2 bits (102), Expect = 7e-05
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +1
Query: 388 DPFNLDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIK 567
D + +D L +E+++R + RA +++ P + F +L LG G TIK
Sbjct: 42 DYYQIDDLLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAGGTIK 101
Query: 568 GYGCAGVSYVTYGLIT 615
GYGC G+S +T IT
Sbjct: 102 GYGCPGLS-ITASAIT 116
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 632 VDSSYRSAMSVQSXLAXGSIYMYGTEDXKQXYLPRMATGELIGCFGLTDP 781
VD+S + + V S LA +I + G+E KQ YLP +A +GC+ LT+P
Sbjct: 123 VDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCWALTEP 172
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 400 LDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYGC 579
LD L ++EK ++ R + ++ P + + F + ++ LG G TIKGYGC
Sbjct: 57 LDELLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAGGTIKGYGC 116
Query: 580 AGVS 591
G+S
Sbjct: 117 PGLS 120
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 632 VDSSYRSAMSVQSXLAXGSIYMYGTEDXKQXYLPRMATGELIGCFGLTDP 781
VD+S S VQS LA SI G+E K+ YL ++ + + + L++P
Sbjct: 134 VDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQKVCVYALSEP 183
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 33.1 bits (72), Expect = 0.29
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 689 IYMYGTEDXKQXYLPRMATGELIGCFGLTDP 781
I + G+E KQ YLP + IGC+ LT+P
Sbjct: 119 IALCGSEAQKQKYLPSLTQFRTIGCWALTEP 149
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 668 SXLAXGSIYMYGTEDXKQXYLPRMATGELIGCFGLTDPIS 787
S L + +G+ K YLP++ +GE +G +++P S
Sbjct: 119 SNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNS 158
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 677 PXYSAHSSLIYKRSQRPSSSLVMRPY-VT*ETPAHP*PLMVQPRAPNSPS 531
P +A S + S R SS L+ P VT ETP P P + RA SPS
Sbjct: 47 PPVAAPMSPVTPSSVRRSSRLLETPTKVTSETPVKPTPTPKRKRAAPSPS 96
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 629 GVDSSYRSAMSVQSXLAXGSIYMYGTEDXKQXYLPRMATGELIGCFGLTD 778
G D S + VQ L GSI GT+ + + + + GCF +T+
Sbjct: 144 GADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTE 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,491,879
Number of Sequences: 37544
Number of extensions: 337321
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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