Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D23
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 LTSKYILSTIYKSNSIRALSTTYSRNAKVTFDWVDPFNLDGQLHDDEKAVRD 441
           +T+KY+ +T+  +  +   ST  S +A  +  W+     D +  D    V D
Sbjct: 1   MTAKYVFTTLINAAFLCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLD 52


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 418 DDEKAVRDSFRAYCNEKLLP 477
           D+E+ VRD FR Y N+ + P
Sbjct: 26  DEERLVRDLFRGY-NKLIRP 44


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 310 TIYKSNSIRALSTTYSRNAKVTFDWVDPFNLDGQLHDDEKAVRDSF 447
           T+ KS S+ +L+    +N  +T      +  DGQ+  D +   D F
Sbjct: 224 TLRKSPSLTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDEFDEF 269


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +1

Query: 283 SLTSKYILSTIYKSNSIRALSTTYSRNAKVTFDWVDPFNLDGQLHDDEKAVRDSFRAYCN 462
           SL+ + I+ +  +  S R  S+   R +  +     P  L  Q H D    +     +CN
Sbjct: 10  SLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCN 69

Query: 463 ---EKLLPRVVEANRNE 504
              EKL    +E++ ++
Sbjct: 70  QDTEKLNQLEIESDNSK 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,861
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)