Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D18
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...   108   9e-25
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.1  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score =  108 bits (260), Expect = 9e-25
 Identities = 52/128 (40%), Positives = 70/128 (54%)
 Frame = +3

Query: 258 VLVFAXXGXXHRHRXLMXXXKXLMPHHKXXSKMEXXXNLYVVNEISEXKNCNKCXLFEGX 437
           VLV +  G  +R R L+     +MPH K  SK++    LY +NE++E  NCN    FE  
Sbjct: 45  VLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESR 104

Query: 438 XXXXLYMWXSNIPNGPSAKFLVXNXYTMGXLKMTGXCLRGSRPLLSFDPQFTKDPHYWLT 617
               LY+  +  PNGP+ KF V N +TM  L MTG  L+GSRP+LSFD  F   PH  + 
Sbjct: 105 RREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVV 164

Query: 618 ERITGTNF 641
           + +    F
Sbjct: 165 KELLQQTF 172



 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
 Frame = +1

Query: 613 LLKELLVQIFGVPNYXPKSQPFFDXVYTFMVLDXXIWFRXYQIL-SEDGA-----LXDIG 774
           ++KELL Q FG+P    +S+PF D V T  + D  IWFR Y+I  +ED +     L +IG
Sbjct: 163 VVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIG 222

Query: 775 XRFVLXPVRYSQDRLVVPIM 834
            RFV+  +   +     P++
Sbjct: 223 PRFVMTIINILEGSFGGPVI 242


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 562 GLCYLSIHNLQKILTTGLLKELLVQIFGVPNYXPKSQPFF 681
           G  +LS    + + T   +KE+ +  +G+ N+   S+PF+
Sbjct: 109 GNIWLSYEGAKNVETGVWIKEMFLDFYGILNFKGHSEPFY 148


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +1

Query: 649 PNYXPKSQPFFDXVYTFMVLDXXIWFRXYQILSEDGALXDIGXRFVLXPVRY 804
           P   PK+      +    +      +  Y+IL E+  L +I  +F   P++Y
Sbjct: 107 PETNPKTPISLKELKDIEIYQNQFHYSAYEILEEEKILDNIFRKFTALPIKY 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,975
Number of Sequences: 5004
Number of extensions: 29756
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)