Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D18
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054...   100   1e-21

>02_04_0434 -
           22904790-22904927,22905220-22905318,22905404-22905472,
           22905582-22905683,22905750-22905824,22906293-22906417,
           22906511-22906589,22906933-22907074,22907200-22907441
          Length = 356

 Score =  100 bits (240), Expect = 1e-21
 Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
 Frame = +3

Query: 246 NXXXVLVFAXXGXXHRHRXLMXXXKXLMPHHKXXSKMEXXXNL-YVVNEISEXKNCNKCX 422
           N   VLV       +R+R LM     L+PH K  SK+E   +    +NE+ E +NC+ C 
Sbjct: 66  NKEKVLVTCSRRINYRYRHLMQNVVSLLPHAKKDSKVESKQSKGNALNELLELRNCSSCL 125

Query: 423 LFEGXXXXXLYMWXSNIPNGPSAKFLVXNXYTMGXLKMTGXCLRGSRPLLSFDPQFTKDP 602
            FE      LY+W    P GPS KFLV   +TM  LK+TG  L+GSRPL++F   F + P
Sbjct: 126 FFECRKQKDLYLWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLITFSTNFDEQP 185

Query: 603 HYWLTERI 626
           H+ L + +
Sbjct: 186 HWQLVKEM 193



 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
 Frame = +1

Query: 637 IFGVPNYXPKSQPFFDXVYTFMVLDXXIWFRXYQI---------LSEDG----ALXDIGX 777
           IF  P    K++PF D V+ F ++D  +WFR YQI         + + G     L ++G 
Sbjct: 222 IFATPKDHRKAKPFHDHVFVFSIVDDHVWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGP 281

Query: 778 RFVLXPVR 801
           RF L P++
Sbjct: 282 RFCLNPIK 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,715,199
Number of Sequences: 37544
Number of extensions: 176085
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)