Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_D16
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 99 4e-21
03_02_0967 + 12786219-12786305,12786716-12786781,12786897-127869... 98 7e-21
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182... 78 1e-14
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402... 69 5e-12
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 37 0.024
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 36 0.042
04_01_0107 - 1107976-1108033,1108411-1108638,1110109-1110422,111... 31 1.2
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 99.1 bits (236), Expect = 4e-21
Identities = 75/221 (33%), Positives = 91/221 (41%), Gaps = 5/221 (2%)
Frame = +3
Query: 219 YVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPP-FAFVXFXXPXXAXXAVXAXXGXX 395
YVG LP R LFY +G + +DLK PP +AFV F P A A+ G
Sbjct: 10 YVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGRHGYD 69
Query: 396 YXGXRLRVXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPXSGSWXX 575
+ G RLRV +YRV+VTGLP S SW
Sbjct: 70 FDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRT------DYRVMVTGLPSSASWQD 123
Query: 576 LKDHMRXAGDVCFAXXFKXGS---GVVXFLXXXXMXXAVXXLXXSRFRXPXGXVXYIRVX 746
LKDHMR AGDVCF+ ++ G G+V + M A+ L S FR YIRV
Sbjct: 124 LKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRA-YIRV- 181
Query: 747 XXYXXXXXXXXXXXXXXXSRSYSPXRXGTPT-SSXVXRSYS 866
Y SRS S R + + S RSYS
Sbjct: 182 REYDSAKRSRSRSRGRSHSRSISRSRSRSRSISRSRSRSYS 222
>03_02_0967 +
12786219-12786305,12786716-12786781,12786897-12786971,
12787054-12787162,12787253-12787299,12787396-12787453,
12788193-12788242,12788459-12788504,12788758-12788808,
12789376-12789478,12789923-12789956,12790210-12790224
Length = 246
Score = 98.3 bits (234), Expect = 7e-21
Identities = 63/179 (35%), Positives = 76/179 (42%), Gaps = 4/179 (2%)
Frame = +3
Query: 219 YVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPP-FAFVXFXXPXXAXXAVXAXXGXX 395
YVG LP R LFY +G + +DLK PP +AFV F P A A G
Sbjct: 10 YVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAGRDGYN 69
Query: 396 YXGXRLRVXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPXSGSWXX 575
+ G RLRV EYRVLVTGLP S SW
Sbjct: 70 FDGHRLRVE---PAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPSSASWQD 126
Query: 576 LKDHMRXAGDVCFAXXFKXGS---GVVXFLXXXXMXXAVXXLXXSRFRXPXGXVXYIRV 743
LKDHMR AGDVCF+ ++ G G+V + M A+ L S FR V + +
Sbjct: 127 LKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEFRNAFSKVNLLEL 185
>07_03_1654 -
28416487-28416548,28416791-28416824,28418156-28418212,
28418401-28418450,28418968-28419025,28419136-28419182,
28419278-28419377,28419446-28419586,28419715-28419780,
28420024-28420118,28420440-28420629
Length = 299
Score = 77.8 bits (183), Expect = 1e-14
Identities = 64/201 (31%), Positives = 78/201 (38%), Gaps = 26/201 (12%)
Frame = +3
Query: 219 YVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPP-FAFVX------------------ 341
YVG LP R LFY +G + +DLK PP FAFV
Sbjct: 76 YVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVELLVYFWILLNILTVYICC 135
Query: 342 ----FXXPXXAXXAVXAXXGXXYXGXRLRVXFXXXXXXXXXXXXXXXXXXXXXXXXXXXX 509
F P A A+ G + G RLRV
Sbjct: 136 LAMKFEDPRDAEDAIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHT- 194
Query: 510 XXXXXEYRVLVTGLPXSGSWXXLKDHMRXAGDVCFAXXFKXGS---GVVXFLXXXXMXXA 680
EYRVLVTGLP S SW LKDHMR AGDVC++ ++ G G+V + M A
Sbjct: 195 -----EYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYA 249
Query: 681 VXXLXXSRFRXPXGXVXYIRV 743
+ L S F+ YIR+
Sbjct: 250 IRKLDDSEFKNAFSKA-YIRI 269
>01_03_0047 +
11939747-11939857,11940058-11940121,11940123-11940253,
11940325-11940432,11942735-11942783,11943188-11943279,
11944394-11944468,11944553-11944658,11944740-11944786,
11944856-11944913,11945299-11945348,11945728-11945784,
11945909-11945916,11946020-11946055,11946904-11946937,
11947030-11947092,11947223-11947237
Length = 367
Score = 68.9 bits (161), Expect = 5e-12
Identities = 47/140 (33%), Positives = 56/140 (40%), Gaps = 3/140 (2%)
Frame = +3
Query: 333 FVXFXXPXXAXXAVXAXXGXXYXGXRLRVXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 512
F F P A A+ G + G RLRV
Sbjct: 183 FYKFEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRS 242
Query: 513 XXXXEYRVLVTGLPXSGSWXXLKDHMRXAGDVCFAXXFKXGS---GVVXFLXXXXMXXAV 683
EYRV+VTGLP S SW LKDHMR AGDVCF+ ++ G+V + M A+
Sbjct: 243 ----EYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAI 298
Query: 684 XXLXXSRFRXPXGXVXYIRV 743
L S FR YIRV
Sbjct: 299 RKLDDSEFRNAFSRA-YIRV 317
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 36.7 bits (81), Expect = 0.024
Identities = 26/71 (36%), Positives = 29/71 (40%)
Frame = +3
Query: 213 RXYVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPPFAFVXFXXPXXAXXAVXAXXGX 392
R YVG + R LF +G V FVDLK G FV F P A A G
Sbjct: 19 RLYVGHISLRTRAEDLENLFSRYGRVRFVDLKNEYG----FVEFSDPRDANDARLDLDGR 74
Query: 393 XYXGXRLRVXF 425
Y G + V F
Sbjct: 75 KYDGSDIIVQF 85
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 35.9 bits (79), Expect = 0.042
Identities = 25/71 (35%), Positives = 30/71 (42%)
Frame = +3
Query: 213 RXYVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPPFAFVXFXXPXXAXXAVXAXXGX 392
R YVG L R LF +G V +VD+K FAFV F A A G
Sbjct: 19 RLYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKH----EFAFVEFSDARDADEARYNLDGR 74
Query: 393 XYXGXRLRVXF 425
+ G R+ V F
Sbjct: 75 DFDGSRMIVEF 85
>04_01_0107 -
1107976-1108033,1108411-1108638,1110109-1110422,
1110568-1110680,1111740-1111845
Length = 272
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +3
Query: 219 YVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPPFAFVXFXXPXXAXXAVXAXXGXXY 398
+VG L R LFY +G + +D+K FAFV F A+ A G +
Sbjct: 5 FVGNLDYDTRHSELDRLFYRYGRIDRIDMKSG----FAFVYFEDERDGDEAIRALDGYPF 60
Query: 399 XGXRLRV 419
R R+
Sbjct: 61 GPGRRRL 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,941,682
Number of Sequences: 37544
Number of extensions: 85161
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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