Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D16
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...   107   1e-23
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.       107   1e-23
Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical p...    30   2.5  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    30   2.5  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score =  107 bits (257), Expect = 1e-23
 Identities = 65/185 (35%), Positives = 82/185 (44%), Gaps = 8/185 (4%)
 Frame = +3

Query: 213 RXYVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPPFAFVXFXXPXXAXXAVXAXXGX 392
           + YVG LP   R      +F+ +G + +VD+K   GP FAFV F     A  AV A  G 
Sbjct: 10  KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69

Query: 393 XYXGXRLRVXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE--------YRVLVTG 548
            + G R+RV F                                          YRV+V G
Sbjct: 70  EFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEG 129

Query: 549 LPXSGSWXXLKDHMRXAGDVCFAXXFKXGSGVVXFLXXXXMXXAVXXLXXSRFRXPXGXV 728
           LP +GSW  LKDHMR AGDVC+A   + G+GVV F     +  AV  L  ++FR   G  
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGET 189

Query: 729 XYIRV 743
            YIRV
Sbjct: 190 AYIRV 194


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score =  107 bits (257), Expect = 1e-23
 Identities = 65/185 (35%), Positives = 82/185 (44%), Gaps = 8/185 (4%)
 Frame = +3

Query: 213 RXYVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPPFAFVXFXXPXXAXXAVXAXXGX 392
           + YVG LP   R      +F+ +G + +VD+K   GP FAFV F     A  AV A  G 
Sbjct: 10  KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69

Query: 393 XYXGXRLRVXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE--------YRVLVTG 548
            + G R+RV F                                          YRV+V G
Sbjct: 70  EFDGRRIRVEFTRGVGPRGPSGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEG 129

Query: 549 LPXSGSWXXLKDHMRXAGDVCFAXXFKXGSGVVXFLXXXXMXXAVXXLXXSRFRXPXGXV 728
           LP +GSW  LKDHMR AGDVC+A   + G+GVV F     +  AV  L  ++FR   G  
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGET 189

Query: 729 XYIRV 743
            YIRV
Sbjct: 190 AYIRV 194


>Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical
           protein C30H6.2 protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 486 HPNGHHRLENHESXHXHXHEGTRLEDGT 403
           H +GH    NH   H H HE T LE+GT
Sbjct: 72  HDHGH----NHGHSHEHHHEHTDLENGT 95


>U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical
           protein F25B5.7d protein.
          Length = 374

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 210 CRXYVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPPFAFVXFXXPXXAXXAVXAXXG 389
           CR +VG LP   +      LF   G +    L    G  FAF+       A  A  A  G
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLS---GKGFAFLRLDTRAHAESAKEAIDG 172

Query: 390 XXYXGXRLRVXF 425
               G ++RV F
Sbjct: 173 RIIHGRQVRVRF 184


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 210 CRXYVGXLPPXXRXXXXXXLFYXFGXVXFVDLKXXXGPPFAFVXFXXPXXAXXAVXAXXG 389
           CR +VG LP   +      LF   G +    L    G  FAF+       A  A  A  G
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLS---GKGFAFLRLDTRAHAESAKEAIDG 172

Query: 390 XXYXGXRLRVXF 425
               G ++RV F
Sbjct: 173 RIIHGRQVRVRF 184


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 486 HPNGHHRLENHESXHXHXHEG 424
           H  GHH ++++ES H   H G
Sbjct: 59  HHGGHHGVQHYESHHESHHHG 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,865,165
Number of Sequences: 27780
Number of extensions: 60832
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)