Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_D15
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.23
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 31 1.6
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 30 2.8
05_07_0359 - 29539294-29540832,29542366-29542518 29 4.9
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 4.9
02_04_0470 - 23183925-23184743,23184929-23185153 29 6.5
02_02_0272 - 8452994-8453187,8453850-8454975 29 6.5
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.5
07_03_0723 + 20954827-20954905,20954974-20956277 28 8.5
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -1
Query: 388 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 272
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 288 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAGKVNL 431
A N+R + S AS +A + + HG+ + G P +G AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/61 (34%), Positives = 25/61 (40%)
Frame = -3
Query: 542 VVHSAAQRVEVGRVGNGAGRVPDRERLGAQXVVVVVEQIDLACDAELLPEAGNAGPGQAQ 363
V + A R GR G G GR R R G + V V +D E+LP A G
Sbjct: 33 VAPTVAGRRGRGRGGRGGGRATGRGRAGGRGRGVPVIDLDPDQPCEVLPGAAIGGVAAGG 92
Query: 362 P 360
P
Sbjct: 93 P 93
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = -1
Query: 409 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 230
P KPG P R +P P S +S A AA +L +K + P+R +
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213
Query: 229 APEVPSEFTVKLPACLRARVGTCLP 155
P P + P L A+ G P
Sbjct: 214 GPGRPRKNAAATPLRLGAKRGPGRP 238
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 416 CDAELLPEAGNAGPGQAQPV 357
C A LLPE GN G GQ+ V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 28.7 bits (61), Expect = 6.5
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Frame = -1
Query: 409 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAAL-----SLWRSLKSADPMALSTFLSLPVR 245
PS +PGMRV R SP +RA P +L S W P A ST S R
Sbjct: 159 PSLPAQPGMRVAHRWSPAK---ARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRR 215
Query: 244 GTFR-AAPEVPSEFTVKLPACLRARVGTCLPLA 149
R P S + + C RA + L A
Sbjct: 216 RHHRLVPPPAASPLSNRQRHCCRAAIAGALESA 248
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 373 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 242
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 376 PVRLSPCPFTLSRASPAEAA 317
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 403 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 302
CSP P R+P+R + C +ASP + + WR
Sbjct: 62 CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,764,436
Number of Sequences: 37544
Number of extensions: 344975
Number of successful extensions: 1076
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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