Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D13
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   387   e-110
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   375   e-106
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   338   5e-95
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   305   4e-85
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    36   6e-04
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  387 bits (952), Expect = e-110
 Identities = 189/227 (83%), Positives = 194/227 (85%)
 Frame = +1

Query: 139 HLVVIGPVAXXXXXXXXXLXSKCGGXXKRTXEQFEQEAQXMGKGSFKXAWVLDKLKAERE 318
           ++VVIG V          L  KCGG  KRT E+FE+EAQ MGKGSFK AWVLDKLKAERE
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

Query: 319 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 498
           RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS
Sbjct: 69  RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128

Query: 499 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPXYSEPRFEEIKKEVXSYIKKIGYNPAAV 678
           KNGQTREHALLAFTLGVKQLIVGVNKMDSTEP YSE RFEEIKKEV SYIKKIGYNPAAV
Sbjct: 129 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAV 188

Query: 679 AFVPISGWXGDXMLEPXTKMPWXKGWXVERKEGXXXGKXLIEXLDXI 819
           AFVPISGW GD MLE  +KMPW KGW VERKEG   GK LIE LD I
Sbjct: 189 AFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAI 235


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  375 bits (922), Expect = e-106
 Identities = 182/227 (80%), Positives = 190/227 (83%)
 Frame = +1

Query: 139 HLVVIGPVAXXXXXXXXXLXSKCGGXXKRTXEQFEQEAQXMGKGSFKXAWVLDKLKAERE 318
           ++VVIG V          L  KCGG  KRT E+FE+EAQ MGKGSFK AWVLDKLKAERE
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68

Query: 319 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 498
           RGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFEAGIS
Sbjct: 69  RGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGIS 128

Query: 499 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPXYSEPRFEEIKKEVXSYIKKIGYNPAAV 678
           KNGQTREHALLAFTLGVKQLIVGVNKMD T+P YSE RFEEIKKEV SYIKKIGYN A+V
Sbjct: 129 KNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASV 188

Query: 679 AFVPISGWXGDXMLEPXTKMPWXKGWXVERKEGXXXGKXLIEXLDXI 819
           AFVPISGW GD MLEP  K PW KGW VERK+G   GK LIE LD I
Sbjct: 189 AFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAI 235


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  338 bits (830), Expect = 5e-95
 Identities = 162/178 (91%), Positives = 163/178 (91%)
 Frame = +1

Query: 286 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 465
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 466 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPXYSEPRFEEIKKEVXSY 645
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP YSE RFEEIKKEV SY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 646 IKKIGYNPAAVAFVPISGWXGDXMLEPXTKMPWXKGWXVERKEGXXXGKXLIEXLDXI 819
           IKKIGYNPAAVAFVPISGW GD MLE  +KMPW KGW VERKEG   GK LIE LD I
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAI 178


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  305 bits (748), Expect = 4e-85
 Identities = 146/162 (90%), Positives = 147/162 (90%)
 Frame = +1

Query: 334 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 513
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 514 REHALLAFTLGVKQLIVGVNKMDSTEPXYSEPRFEEIKKEVXSYIKKIGYNPAAVAFVPI 693
           REHALLAFTLGVKQLIVGVNKMDSTEP YSE RFEEIKKEV SYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 694 SGWXGDXMLEPXTKMPWXKGWXVERKEGXXXGKXLIEXLDXI 819
           SGW GD MLE  +KMPW KGW VERKEG   GK LIE LD I
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAI 162


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 35.5 bits (78), Expect = 6e-04
 Identities = 32/109 (29%), Positives = 47/109 (43%)
 Frame = +1

Query: 373 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 552
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 553 QLIVGVNKMDSTEPXYSEPRFEEIKKEVXSYIKKIGYNPAAVAFVPISG 699
            +IV +NK+D       + ++E  K  +   I+++G     V    + G
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELGGEIQCVKISALKG 293


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 358 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 459
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 358 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 459
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 735 FGXRLQHVVSVPSRNGHESDSSWV 664
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,052
Number of Sequences: 438
Number of extensions: 2820
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)