Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D12
         (1012 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   1.9  
04_03_0904 + 20717005-20718087                                         30   3.4  
04_04_0832 - 28507448-28507516,28507902-28507980,28508527-28509614     29   7.8  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 569 TPLXPSXSTXPKXSPXYLEPXXYPPNXVXLXNPLPXPAXXYP 694
           TPL P+    P+ +  Y  P  YPPN       +P P+   P
Sbjct: 378 TPLPPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAP 419


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = +2

Query: 551 PXXXXXTPLXPSXSTXPKXSPXYLEPXXYPPNXVXLXNPLPXPAXXYP 694
           P     TP  PS    PK +P    P   PP+      P P P    P
Sbjct: 166 PTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTP 213



 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/56 (28%), Positives = 19/56 (33%)
 Frame = +2

Query: 551 PXXXXXTPLXPSXSTXPKXSPXYLEPXXYPPNXVXLXNPLPXPAXXYPXRALPAXT 718
           P     TP  PS    PK +P    P   PP+      P P P      +  P  T
Sbjct: 186 PTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQPKPNPPPT 241


>04_04_0832 - 28507448-28507516,28507902-28507980,28508527-28509614
          Length = 411

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -2

Query: 819 GGXGRXEXSXEGGGFWERSXGRGXXTXWXXXXXRVXAGRARXG 691
           GG G      +  GFW    G G  T W     R+  GR R G
Sbjct: 336 GGGGGGPGGHDTPGFWNGMIGGGSGTSWGIVKRRM-KGRTRLG 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,732,692
Number of Sequences: 37544
Number of extensions: 272174
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2975543960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)