Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D12
         (1012 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   4.0  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   7.0  

>Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical
           protein F10A3.4 protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -2

Query: 342 ADPQLVAVLHGVPSXXNDQVVNYILDDGA-LAXALIFQAVTDSTVVVXGEDAVVQFLLEV 166
           ADP  V ++  +       VV YI+  G  LA   ++ A   + VVV G      FLL  
Sbjct: 74  ADPDKVEIVDSL------NVVRYIVHTGTVLANVPLWLAAPSAQVVVTGVSGNSSFLLNY 127

Query: 165 LVRSVRGXFNDARAGGEH 112
             +S+ G     +  GEH
Sbjct: 128 RYQSLSGFKQVIKPTGEH 145


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/60 (30%), Positives = 21/60 (35%)
 Frame = +2

Query: 515 TPXLNSSVXTSXPXXXXXTPLXPSXSTXPKXSPXYLEPXXYPPNXVXLXNPLPXPAXXYP 694
           +P +   V T  P     TP  PS S  P   P    P  +PP  V      P P    P
Sbjct: 195 SPVVPPLVVTGTPSIVTVTP--PSPSVTPGGRPGSTPPATFPPGSVSTVRYTPGPTPPAP 252


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/60 (28%), Positives = 21/60 (35%)
 Frame = +2

Query: 515 TPXLNSSVXTSXPXXXXXTPLXPSXSTXPKXSPXYLEPXXYPPNXVXLXNPLPXPAXXYP 694
           +P +   V T  P     TP  PS S  P   P    P  +PP  +      P P    P
Sbjct: 118 SPVVPPLVVTGTPSIVTVTP--PSPSVTPGGRPGSTPPATFPPGSISTVRYTPGPTPPGP 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,003,678
Number of Sequences: 27780
Number of extensions: 208293
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2657408452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)