Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D11
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    54   3e-08
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    30   0.37 
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    27   2.6  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 32/99 (32%), Positives = 42/99 (42%)
 Frame = +3

Query: 477 VGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXXXXXXXXKIKGCRVIGFAGTDDT 656
           VG++GMP  TAY G   I KPK                      K  G  V+G  G+D+ 
Sbjct: 138 VGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEK 197

Query: 657 VXWLEEELGFDXAFXYKTVDVPAALKEAAPNGIDCYFDH 773
              +  + G+D  F YK      AL    P GID YF++
Sbjct: 198 FK-ICLDSGYDSVFNYKKESPFKALPRLCPKGIDIYFEN 235


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 624 RVIGFAGTDDTVXWLEEELGFDXAFXYKTVDVPAALKEAAPNGIDC 761
           +VIG     + +    ++ GF      +  DVP  + E   NG+DC
Sbjct: 248 KVIGIEVVPERIELARQKFGFTVIDRNEVSDVPKKIMELVSNGVDC 293


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +1

Query: 37  RFFESLSGSACDKKTQGTTKVEMTSARKYVVKNHFKGVPKREDYELVEFVIPPLIDGEVL 216
           R F +L G+    K Q  ++ E  SARK       + + KR + EL E      I+ E+L
Sbjct: 75  RMFGALLGTL--GKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEIL 132

Query: 217 X*SRMDQRRPVFKGLQL 267
                +QR+     L+L
Sbjct: 133 ESRLQEQRKVALDELEL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,188
Number of Sequences: 5004
Number of extensions: 55453
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)