Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_D11
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0764 + 6934570-6934726,6935150-6935316,6935408-6935490,693... 86 3e-17
12_01_0756 + 6869100-6869327,6869943-6870123,6870233-6870399,687... 82 5e-16
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787 82 5e-16
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 81 1e-15
12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691... 77 1e-14
12_01_0759 + 6894556-6894628,6894653-6894738,6895039-6895121,689... 76 4e-14
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 73 3e-13
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 71 1e-12
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474... 70 3e-12
>12_01_0764 +
6934570-6934726,6935150-6935316,6935408-6935490,
6935588-6935966
Length = 261
Score = 86.2 bits (204), Expect = 3e-17
Identities = 50/129 (38%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Frame = +3
Query: 480 GAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXXXXXXXXKIKGCRVIGFAGTDDTV 659
G +GMPG TAY GF E+ KPK KI GC V+G AG+D+ V
Sbjct: 50 GILGMPGLTAYGGFFEVAKPKKGEYVFISSAFGAVGQIVGQLAKITGCYVVGSAGSDEKV 109
Query: 660 XWLEEELGFDXAFXY-KTVDVPAALKEAAPNGIDCYFDHCRR*XQQSDN*PNERLREGSP 836
L+ + GFD AF Y K +D+ AALK P+GID YF++ PN R+
Sbjct: 110 NLLKTKFGFDDAFNYKKELDLEAALKRCFPDGIDIYFENVGG-AMLDAVLPNMRVAGRIA 168
Query: 837 XCGSIXAYH 863
CG I Y+
Sbjct: 169 ACGMISQYN 177
>12_01_0756 +
6869100-6869327,6869943-6870123,6870233-6870399,
6870523-6870605,6870716-6871094
Length = 345
Score = 82.2 bits (194), Expect = 5e-16
Identities = 53/154 (34%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Frame = +3
Query: 405 TQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXX 584
T N PK ++K+ + S G +G+ G TAY GF E+ KPK
Sbjct: 110 TLVNNPKPYLHKI-NYPEFPLSYYTGVLGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAV 168
Query: 585 XXXXXXXXKIKGCRVIGFAGTDDTVXWLEEELGFDXAFXY-KTVDVPAALKEAAPNGIDC 761
KI GC V+G AG+D+ V L+ + GF AF Y K +D+ ALK P+GID
Sbjct: 169 GQIVGQLAKITGCYVVGSAGSDEKVKLLKTKFGFHDAFNYKKELDLEGALKRCFPDGIDI 228
Query: 762 YFDHCRR*XQQSDN*PNERLREGSPXCGSIXAYH 863
YFD+ PN R+ CG I Y+
Sbjct: 229 YFDNVGG-AMLDAVLPNMRIGGKITICGMISQYN 261
>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
Length = 345
Score = 82.2 bits (194), Expect = 5e-16
Identities = 43/99 (43%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +3
Query: 480 GAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXXXXXXXXKIKGCRVIGFAGTDDTV 659
G +GM G TAY GF EIC P+ K+ GC V+G AG+DD V
Sbjct: 134 GLLGMAGFTAYVGFHEICAPREGERVYVSAASGAVGQLVGQFAKLMGCYVVGSAGSDDKV 193
Query: 660 XWLEEELGFDXAFXY-KTVDVPAALKEAAPNGIDCYFDH 773
L E+ GFD AF Y K D+ AALK P GID YF++
Sbjct: 194 RLLREKFGFDDAFNYKKESDLSAALKRCFPEGIDIYFEN 232
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 115 RKYVVKNHFKGVPKREDYELV 177
+K V++NH G PK D ELV
Sbjct: 6 KKIVLRNHVTGFPKESDMELV 26
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 80.6 bits (190), Expect = 1e-15
Identities = 49/129 (37%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = +3
Query: 480 GAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXXXXXXXXKIKGCRVIGFAGTDDTV 659
G +GMPG TAY GF E+ KPK KI GC V+G AG+D+ V
Sbjct: 135 GILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYVVGSAGSDEKV 194
Query: 660 XWLEEELGFDXAFXY-KTVDVPAALKEAAPNGIDCYFDHCRR*XQQSDN*PNERLREGSP 836
L+ + GF+ AF Y K D+ AAL+ P GID YF++ + PN RL
Sbjct: 195 SLLKTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLDAVL-PNMRLGGRIA 253
Query: 837 XCGSIXAYH 863
CG I Y+
Sbjct: 254 ACGMISQYN 262
>12_01_0760 +
6910325-6910558,6911305-6911455,6911949-6912115,
6912227-6912309,6912395-6912773
Length = 337
Score = 77.4 bits (182), Expect = 1e-14
Identities = 41/99 (41%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +3
Query: 480 GAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXXXXXXXXKIKGCRVIGFAGTDDTV 659
G +GMPG TAY GF ++ KPK KI GC VIG AG D+ V
Sbjct: 126 GILGMPGLTAYAGFFDVPKPKKGEYVFISGASGAVGQVVGQLAKITGCYVIGSAGYDEKV 185
Query: 660 XWLEEELGFDXAFXY-KTVDVPAALKEAAPNGIDCYFDH 773
L+ + GFD AF Y K D+ AAL+ P GID Y+++
Sbjct: 186 NLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYEN 224
>12_01_0759 +
6894556-6894628,6894653-6894738,6895039-6895121,
6895278-6895650
Length = 204
Score = 75.8 bits (178), Expect = 4e-14
Identities = 51/126 (40%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Frame = +3
Query: 489 GMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXXXXXXXXKIKGCRVIGFAGTDDTVXWL 668
GM G TAY GF E+ KPK KIKGC V+G AG+DD V L
Sbjct: 6 GMHGLTAYVGFFEMSKPKKACGAIGQIVGQLA--------KIKGCYVVGSAGSDDKVNLL 57
Query: 669 EEELGFDXAFXY-KTVDVPAALKEAAPNGIDCYFDHCRR*XQQSDN*PNERLREGSPXCG 845
+ + GFD AF Y K D+ AALK P GID F++ PN RL CG
Sbjct: 58 KTKFGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGG-AMLDAVLPNMRLGGRITMCG 116
Query: 846 SIXAYH 863
I YH
Sbjct: 117 MISQYH 122
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 72.9 bits (171), Expect = 3e-13
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Frame = +3
Query: 399 LXTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXX 578
L TQP T ++K+ + L S G +G+ G TAY F E+ KPK
Sbjct: 125 LITQPET----LHKI-NHPDLPLSYYTGVLGVTGLTAYAAFFEVGKPKKGETVFVSAASG 179
Query: 579 XXXXXXXXXXKIKGCRVIGFAGTDDTVXWLEEELGFDXAFXYK--TVDVPAALKEAAPNG 752
KI GC V+G AG+D+ V L+ + GF AF YK + D+ AL+ P+G
Sbjct: 180 AVGQIVGQLAKIAGCYVVGSAGSDEKVTLLKTKFGFHDAFNYKKESNDLTGALRRCFPDG 239
Query: 753 IDCYFDH 773
ID YFD+
Sbjct: 240 IDIYFDN 246
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 70.9 bits (166), Expect = 1e-12
Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Frame = +3
Query: 438 KLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXXXXXXXXKIK 617
KL L S + A+G G TAY G E+ +P+ K+
Sbjct: 119 KLAASDDLPLSHHLSALGTSGMTAYAGLYEVGRPEAGEKVFVSAASGSVGSLVGQFAKLA 178
Query: 618 GCRVIGFAGTDDTVXWLEEELGFDXAFXYK-TVDVPAALKEAAPNGIDCYFDH 773
GC V+G AGT+ V L+ +LGFD AF YK D+ +ALK P+GID YFD+
Sbjct: 179 GCYVVGCAGTNAKVDLLKNKLGFDDAFNYKDEPDMKSALKRYFPDGIDIYFDN 231
>01_06_1628 +
38745964-38746480,38747116-38747282,38747325-38747440,
38747718-38748114
Length = 398
Score = 69.7 bits (163), Expect = 3e-12
Identities = 44/114 (38%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Frame = +3
Query: 468 SLGVGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXXXXXXXXKIKGCRVIGFAGT 647
S +G +GMPG TAY GF EIC PK K+ GC V+G AGT
Sbjct: 166 SYHLGLLGMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLAKLHGCYVVGSAGT 225
Query: 648 DD-----------TVXWLEEELGFDXAFXYK-TVDVPAALKEAAPNGIDCYFDH 773
+ V L+ + GFD AF YK D+ AALK P GID YF++
Sbjct: 226 NQKMHHSGFTAMFQVELLKGKFGFDAAFNYKEEPDLTAALKRYFPEGIDIYFEN 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,427,552
Number of Sequences: 37544
Number of extensions: 387419
Number of successful extensions: 1076
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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