Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D11
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p...    28   10.0 
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    28   10.0 

>Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical
           protein M106.3b protein.
          Length = 365

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
 Frame = +3

Query: 441 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXXXXXXXXKI 614
           LP  +  SPS+ +   G+ G TA  G  +  +                          +I
Sbjct: 138 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 197

Query: 615 KGC-RVIGFAGTDDTVXWLEEELGFDXAFXYKTVDVPAALKEAAPNGIDCYFDHCRR*XQ 791
           +GC +VIG  G+DD    L+ E GF+    YKT +V   L   AP GID Y+D+      
Sbjct: 198 EGCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNVG--GV 255

Query: 792 QSDN*PNERLREGS-PXCGSIXAYHED 869
            SD+       EG    CG I  Y+ D
Sbjct: 256 ISDDVIRAMNNEGRVVLCGQIAVYNTD 282


>Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical
           protein M106.3a protein.
          Length = 373

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
 Frame = +3

Query: 441 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXXXXXXXXKI 614
           LP  +  SPS+ +   G+ G TA  G  +  +                          +I
Sbjct: 146 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 205

Query: 615 KGC-RVIGFAGTDDTVXWLEEELGFDXAFXYKTVDVPAALKEAAPNGIDCYFDHCRR*XQ 791
           +GC +VIG  G+DD    L+ E GF+    YKT +V   L   AP GID Y+D+      
Sbjct: 206 EGCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNVG--GV 263

Query: 792 QSDN*PNERLREGS-PXCGSIXAYHED 869
            SD+       EG    CG I  Y+ D
Sbjct: 264 ISDDVIRAMNNEGRVVLCGQIAVYNTD 290


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 528 FLRNQNKQSRPASQPPLRP--ATATIPADLVVYKYDP 424
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 574 FFRNHNTLGEPAQDPAVWPSVAAATKIANLFRYQYLP 610


>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 261 TTLTKLYPTTSSVIKWVLLSNQGIATIR*ERELLRTKDGATTTSSLLXTQPNT--PKDRI 434
           TT T     TSS +    +SN   ATI    +   +  G+ TT +   ++P++  P + +
Sbjct: 606 TTTTATVAPTSSTVPSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSSRHPSEEV 665

Query: 435 YKLP 446
           Y+ P
Sbjct: 666 YRSP 669


>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 261 TTLTKLYPTTSSVIKWVLLSNQGIATIR*ERELLRTKDGATTTSSLLXTQPNT--PKDRI 434
           TT T     TSS +    +SN   ATI    +   +  G+ TT +   ++P++  P + +
Sbjct: 606 TTTTATVAPTSSTVPSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSSRHPSEEV 665

Query: 435 YKLP 446
           Y+ P
Sbjct: 666 YRSP 669


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 528 FLRNQNKQSRPASQPPLRP--ATATIPADLVVYKYDP 424
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 641 FFRNHNTIGAPAQDPAVWPSVAAATKKANLFRYQYLP 677


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,425
Number of Sequences: 27780
Number of extensions: 318282
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)