Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_D07
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1201 - 11419851-11419913,11420090-11420311 33 0.39
12_02_1188 + 26801833-26802225 31 1.6
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 31 1.6
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 31 1.6
03_06_0711 - 35682293-35682952 30 2.1
01_01_1008 - 7987936-7988628,7988923-7989102 30 2.7
01_01_0684 + 5255634-5256029,5256222-5256326 29 3.6
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 29 4.7
01_06_0826 - 32252546-32253208 29 4.7
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.3
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 28 8.3
05_01_0609 + 5443780-5443875,5444540-5445136,5448792-5448881,544... 28 8.3
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.7 bits (71), Expect = 0.39
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 574 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIPVR-LSPLREAWRFLIAHAVGISX 744
Q+WR+ PTG + +FP G LP A PA R P L P R A + + +
Sbjct: 27 QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRVAEGLFGLNGIEVGI 86
Query: 745 RCXSFAP 765
+F P
Sbjct: 87 EGDNFTP 93
>12_02_1188 + 26801833-26802225
Length = 130
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 694 GEKGGQVSGKRQGRNRRAHEGASQGETPGIFIVLSG 587
G GG SGKR AHEG +G P +++V G
Sbjct: 30 GGGGGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 636 RELPRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 508
R L RGK L+S + R PP + + V+ + GGG G P T
Sbjct: 22 RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 540 PERASQKSTLKSEVAKPDRTIKIPGVSPWEAPSCALLFRPCRLPDTCPPFSPSGSVALSH 719
P S K L SE + K P + E+P+ + +L + PPF+P +++SH
Sbjct: 1429 PSHDSSKEVLSSEPEEIGNDEKAPDSNSDESPTESKKKGGSKLSASAPPFNPGSLLSMSH 1488
>03_06_0711 - 35682293-35682952
Length = 219
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 537 PPERASQKST-LKSEVAKPDRTIKIPGVSPWEAPSCALLFRPCRLPDTCPPFSPSGSVAL 713
PP A ST E P P P EA S A P P+T P +PS S +
Sbjct: 32 PPASAPTASTPAADERLHPADAALAPSQPPSEASSSAAALSPPAPPETSPLPAPSHSPPV 91
Query: 714 SHSS 725
HS+
Sbjct: 92 PHSA 95
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 685 GGQVSGKRQGRNRRAHEGASQGETPG 608
GG+V+G+ R+RR GA +GE G
Sbjct: 249 GGEVNGEEAARSRRRRRGAWEGEEEG 274
>01_01_0684 + 5255634-5256029,5256222-5256326
Length = 166
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 745 EXRYLQREL*ESATLPEGEKGGQVSGKRQGRNRRAHEGASQGETPG 608
E L + A + EGE+GG+ KR+ RR +GA + G
Sbjct: 36 EAHQLPEQAEAGAGVAEGEEGGRERRKRRKARRRQRKGAGDDDAAG 81
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 522 FHRLRPPERASQKSTLKSEVAKPDRTIKIPGVSPWEAPSCALLFRPCR 665
++ R E S + T+K E+ DRT K P + PW CAL PCR
Sbjct: 495 YYNPRESEPNSWEDTMKDEL---DRT-KYPRM-PWHDVQCALYGPPCR 537
>01_06_0826 - 32252546-32253208
Length = 220
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 576 EVAKPDRTIKIPGVSPWEAPSCALLFRPCRLPDTCPPFSPSGSVALSHSS 725
EV+KP R + G PS L C+ PP SP+G A S SS
Sbjct: 5 EVSKPSRRLSPKGSFKLSLPSL-LACGQCKATAVSPPESPTGVGARSFSS 53
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 343 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 498
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +1
Query: 529 GSAPLNEHHKNRRSSQRWRNPTGL*RYQAFPPGKLPRALSCSDPAAYRIPVRLSPLREAW 708
GS N ++ R+S Q+ ++P A P LPRAL+ AA R+P+ P +A
Sbjct: 163 GSGKGNHRNRKRKSHQQRQSP-------AAAPSLLPRALALLADAAGRLPLGEHP--DAR 213
Query: 709 RFLIAHAVGIS 741
R L+ A ++
Sbjct: 214 RSLVDTAAELA 224
>05_01_0609 +
5443780-5443875,5444540-5445136,5448792-5448881,
5449615-5450121
Length = 429
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 624 WEAPSCALLFRPCRLPDTCPPFSPS-GSVALSHSSRC 731
W + C L + RLP T PP +P+ GS+ + +SRC
Sbjct: 131 WSS-DCLLELQHRRLPSTAPPLTPTLGSICM--ASRC 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,607,956
Number of Sequences: 37544
Number of extensions: 419677
Number of successful extensions: 1274
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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