Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D06
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.49 
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   2.6  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   4.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   6.1  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   6.1  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 749 CLRCWGKSGNWNSWR 705
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 355 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 179
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 178 RSVXP 164
           RS  P
Sbjct: 334 RSSIP 338


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +2

Query: 641 CLDEKICYNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTXDVGLNAYYYYFXSH 811
           C+  K   +    K       + ++SNSL + + ++       DV  N Y  YF  H
Sbjct: 55  CISGKFVKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGH 111


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 779 LNAYYYYFXSHLPFWWXSGKYGAFKXR 859
           LN Y  YF +H P      K+G+FK +
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSFKLK 145


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 662 YNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTXDVGLNAYYYYFXS 808
           YN+     N++   +   ++  T  N +++  YLT DV      YY+ S
Sbjct: 233 YNFNFSAPNKRMQRFT--ASEATTVNGQNQSVYLTYDVPYGRSLYYYTS 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,244,083
Number of Sequences: 5004
Number of extensions: 65101
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)