Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D05
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   173   3e-44
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   167   2e-42
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   1.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  173 bits (421), Expect = 3e-44
 Identities = 79/121 (65%), Positives = 97/121 (80%)
 Frame = +3

Query: 123 VLALNEEXVTKMLAATTHLGAENVNFQMEXYVYKRRADGTHVINLRRTWEKLVLAARAVV 302
           VL   ++ +  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 303 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 482
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 483 P 485
           P
Sbjct: 130 P 130



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 33/51 (64%), Positives = 38/51 (74%)
 Frame = +2

Query: 536 VIALCNTDSPLRFVDIAIPXHTKSSHSIGLMWWLLAREVLRLRGVLPXTXA 688
           VIALC+TDS L  VD+AIP + K   SIGL W+LLAREVLRLRG +  T A
Sbjct: 147 VIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTA 197



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = +1

Query: 493 DHQPITEASYVNIPGDCFVQHRLPTKICGHCYPMXHQVFPLYWFDVVVVGT*SAEASWCA 672
           D Q I EAS+VNIP                  P+ ++ +        ++           
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192

Query: 673 SXDXRWXVVVXLFFYRDPXKVKR 741
           S    W V+  L+FYRDP +++R
Sbjct: 193 SRTTAWEVMPDLYFYRDPEEIER 215


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  167 bits (406), Expect = 2e-42
 Identities = 73/121 (60%), Positives = 96/121 (79%)
 Frame = +3

Query: 123 VLALNEEXVTKMLAATTHLGAENVNFQMEXYVYKRRADGTHVINLRRTWEKLVLAARAVV 302
           +L   +E + ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAAR + 
Sbjct: 9   ILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIA 68

Query: 303 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 482
            IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V D
Sbjct: 69  TIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTD 128

Query: 483 P 485
           P
Sbjct: 129 P 129



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 32/46 (69%), Positives = 37/46 (80%)
 Frame = +2

Query: 536 VIALCNTDSPLRFVDIAIPXHTKSSHSIGLMWWLLAREVLRLRGVL 673
           VIALC+TDS L  VDIAIP + K   SIGL+W+LLAREVLR+RG L
Sbjct: 146 VIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
 Frame = +1

Query: 493 DHQPITEASYVNIP------GDCFVQH---RLPTKICGHCYPMXHQVFPLYWFDVVVVGT 645
           D Q I EAS+VNIP       D  + H    +PT   G       +   L W+   ++  
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKG------RKSIGLIWY---LLAR 182

Query: 646 *SAEASWCASXDXRWXVVVXLFFYRDPXKVKR 741
                    S    W V+  L+FYRDP +V+R
Sbjct: 183 EVLRVRGTLSRSAPWDVMPDLYFYRDPEEVER 214


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 246 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 422
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,766
Number of Sequences: 5004
Number of extensions: 62125
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)