Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_D05
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 173 1e-43
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 171 8e-43
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 4.6
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.1
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 173 bits (422), Expect = 1e-43
Identities = 82/133 (61%), Positives = 100/133 (75%)
Frame = +3
Query: 93 ISATXSGGLXVLALNEEXVTKMLAATTHLGAENVNFQMEXYVYKRRADGTHVINLRRTWE 272
++A G L+ E+ V MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 273 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 452
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 453 REPRLLIVLDPGT 491
EPRLLI+ DP T
Sbjct: 121 SEPRLLILTDPRT 133
Score = 64.5 bits (150), Expect = 1e-10
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = +2
Query: 503 PLLKLHMSTFLVIALCNTDSPLRFVDIAIPXHTKSSHSIGLMWWLLAREVLRLRG-VLP 676
P+ + + IA C+TDSP+R+VDI IP + K +SIG ++WLLAR VL++RG +LP
Sbjct: 137 PIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILP 195
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +1
Query: 493 DHQPITEASYVNIPGDCFVQHRLPTKICGHCYPMXHQ----VFPLYWFDVVVVGT*SAEA 660
DHQPI E++ NIP F P + P ++ + L+W +V +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMV----LQM 189
Query: 661 SWCASXDXRWXVVVXLFFYRDPXKVK 738
+W V+V LFFYRDP + K
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDPEEAK 215
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 171 bits (415), Expect = 8e-43
Identities = 80/133 (60%), Positives = 98/133 (73%)
Frame = +3
Query: 93 ISATXSGGLXVLALNEEXVTKMLAATTHLGAENVNFQMEXYVYKRRADGTHVINLRRTWE 272
++A L+ E+ + MLAA HLG +N +FQME YVYKRR DG ++INL +TWE
Sbjct: 1 MAAEGGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWE 60
Query: 273 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 452
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 453 REPRLLIVLDPGT 491
EPRLLI+ DP T
Sbjct: 121 SEPRLLILTDPRT 133
Score = 64.5 bits (150), Expect = 1e-10
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +2
Query: 503 PLLKLHMSTFLVIALCNTDSPLRFVDIAIPXHTKSSHSIGLMWWLLAREVLRLRG-VLP 676
P+ + + IA C+TDSP+R+VDI IP + K SIG ++WLLAR VL++RG +LP
Sbjct: 137 PIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILP 195
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +1
Query: 493 DHQPITEASYVNIPGDCFVQHRLPTKICGHCYPMXHQ----VFPLYWFDVVVVGT*SAEA 660
DHQPI E++ NIP F P + P ++ + L+W +V +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMV----LQM 189
Query: 661 SWCASXDXRWXVVVXLFFYRDPXKVK 738
+W V+V LFFYRDP + K
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDPEEAK 215
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 4.6
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = +2
Query: 134 QRGXCHQNACCNHPSWGRKC*LPDGXLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHRE 313
+RG CH C P GR+ P G + CD A+ G TC C H+
Sbjct: 321 ERG-CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKC 374
Query: 314 PR*CVRHLITALRSACCTEVCR 379
P C R T+ CR
Sbjct: 375 PERCHRGSCVETCRLVITKSCR 396
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 371 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 478
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 375 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 220
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,676,897
Number of Sequences: 37544
Number of extensions: 475240
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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