Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D04
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    90   4e-19

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 89.8 bits (213), Expect = 4e-19
 Identities = 39/78 (50%), Positives = 50/78 (64%)
 Frame = +1

Query: 595 EYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNXHFSKNHHFGFEAAA 774
           EY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +  HH GFE   
Sbjct: 192 EYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGI 251

Query: 775 *Y*HFVDVV*LXLYIXIY 828
            Y HF DVV L LY+ IY
Sbjct: 252 YYWHFCDVVWLFLYLTIY 269



 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 44/117 (37%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
 Frame = +3

Query: 231 RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 410
           RD+S E    G HT  V KGL+ G                    H  LSP  E+G + PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128

Query: 411 SRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYF 575
             I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F F
Sbjct: 129 VGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLF 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,974
Number of Sequences: 5004
Number of extensions: 35745
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)