Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D03
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0373 + 23581812-23583293                                         30   2.0  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    30   2.7  
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414...    29   4.6  

>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 466 DVQGGPCGAPRPCARCSASTVPKPPW 389
           D  GG   A    +RCSAST PK PW
Sbjct: 53  DGAGGYGSAASSPSRCSASTPPKSPW 78


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 491 EKLQAAVQNTVQESQKLAKKVSSNVQETXEKLAPKIKAAYDDFAKNXQE 637
           EKLQ  + +  QE+Q+L KK+SS V E  ++   ++ +  +  A+   E
Sbjct: 153 EKLQKEISSLSQENQELKKKISS-VLENSDRAESEVASLKEALAQQEAE 200


>04_04_0285 -
           24136865-24137000,24137554-24137611,24138142-24141480,
           24141789-24142218,24142861-24142928,24143015-24143165
          Length = 1393

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +2

Query: 464 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETXEKLAPKIKAAYDD 616
           +EK++ ++ E+ Q+    + Q+ +K AKKVSS   E+ +    K +  Y +
Sbjct: 516 LEKSSKSILEETQSVGHTSQQKKRKKAKKVSSVDMESLDISGEKDQCGYGE 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,444,437
Number of Sequences: 37544
Number of extensions: 188686
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)