Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D02
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   139   5e-34
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   138   7e-34

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  139 bits (336), Expect = 5e-34
 Identities = 65/135 (48%), Positives = 88/135 (65%)
 Frame = +2

Query: 194 LRSVTVXAVXXAXLVKTVAAXLKKTGKVKVPEHXDLVKXARFKXLAPYXPDWFYVRCAAI 373
           +  V+V  V     +   AA LK++GK+  P+  D+VK    K LAPY PDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 374 LRHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 553
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 554 RILTTQGRRDLDRIA 598
           R ++ QG+RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  138 bits (335), Expect = 7e-34
 Identities = 65/135 (48%), Positives = 88/135 (65%)
 Frame = +2

Query: 194 LRSVTVXAVXXAXLVKTVAAXLKKTGKVKVPEHXDLVKXARFKXLAPYXPDWFYVRCAAI 373
           +  V+V  V     +   AA LK++GK+  P+  D+VK    K LAPY PDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 374 LRHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 553
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 554 RILTTQGRRDLDRIA 598
           R ++ QG+RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,027
Number of Sequences: 5004
Number of extensions: 31609
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)