Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D02
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   151   9e-37
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975...    29   4.9  
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444...    28   8.5  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  151 bits (365), Expect = 9e-37
 Identities = 68/134 (50%), Positives = 94/134 (70%)
 Frame = +2

Query: 206 TVXAVXXAXLVKTVAAXLKKTGKVKVPEHXDLVKXARFKXLAPYXPDWFYVRCAAILRHI 385
           TV  V     VK  +A LK++GK+++PE  D+VK ARFK L PY PDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 386 YIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 565
           Y+R  +GV    KI+GGR RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++T
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127

Query: 566 TQGRRDLDRIAAQV 607
           +QGRRDLD++A +V
Sbjct: 128 SQGRRDLDQVAGRV 141


>05_05_0116 -
           22496535-22496576,22496974-22497058,22497468-22497545,
           22497656-22497803,22498612-22498771,22499056-22499058
          Length = 171

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +2

Query: 494 RKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRIAAQVRLKAKQQAKQXVIVL 652
           R AL++L+ + L ++++ DGG +L T+G    ++++A     A   A+Q + +L
Sbjct: 110 RTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQWINIL 163


>10_08_0669 +
           19742140-19742189,19742886-19742923,19744260-19744448,
           19746402-19748188
          Length = 687

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 461 SHFCRSSGSIARKALQSL-----EALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLKAKQ 625
           SH C S  S+ R+ LQS+     EA +L  + ++  R    Q + DLD +A ++ L  + 
Sbjct: 193 SHPCFSKNSLCRELLQSVAATLAEAAELGARCREPPRAGKLQMQSDLDALAGKLDLNLRD 252

Query: 626 QA 631
            A
Sbjct: 253 CA 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,140
Number of Sequences: 37544
Number of extensions: 231664
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)