Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_D02
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   146   2e-35
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   146   2e-35

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  146 bits (353), Expect = 2e-35
 Identities = 73/144 (50%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
 Frame = +2

Query: 197 RSVTVXAVXXAXLVKTVAAXLKKTGKVKVPEHXDLVKXARFKXLAPYXPDWFYVRCAAIL 376
           R+ ++  V      K++A  LKK+GKVKVPE  DLVK    K LAP  PDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 377 RHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 553
           RH+Y R P G+    K++GG  R GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 554 RILTTQGRRDLDRIAAQVRLKAKQ 625
           RIL+ QGR+DLDRIA  +R   +Q
Sbjct: 122 RILSKQGRKDLDRIATSLRSSGQQ 145


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  146 bits (353), Expect = 2e-35
 Identities = 73/144 (50%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
 Frame = +2

Query: 197 RSVTVXAVXXAXLVKTVAAXLKKTGKVKVPEHXDLVKXARFKXLAPYXPDWFYVRCAAIL 376
           R+ ++  V      K++A  LKK+GKVKVPE  DLVK    K LAP  PDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 377 RHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 553
           RH+Y R P G+    K++GG  R GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 554 RILTTQGRRDLDRIAAQVRLKAKQ 625
           RIL+ QGR+DLDRIA  +R   +Q
Sbjct: 122 RILSKQGRKDLDRIATSLRSSGQQ 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,837
Number of Sequences: 27780
Number of extensions: 194769
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)