Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C24
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 144 1e-35
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 144 1e-35
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 31 0.28
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 29 0.65
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.5
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 3.5
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 26 8.1
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 144 bits (349), Expect = 1e-35
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = +1
Query: 520 PGEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADXLINA 699
P EDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+ +INA
Sbjct: 120 PREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINA 179
Query: 700 AKGSSNSYAIKKKDELERVAKSNR 771
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 180 AKGSSNSYAIKKKDELERVAKSNR 203
Score = 124 bits (300), Expect = 1e-29
Identities = 65/112 (58%), Positives = 83/112 (74%)
Frame = +2
Query: 149 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 328
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 329 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 484
KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPL
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPL 108
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 144 bits (349), Expect = 1e-35
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = +1
Query: 520 PGEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADXLINA 699
P EDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+ +INA
Sbjct: 120 PREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINA 179
Query: 700 AKGSSNSYAIKKKDELERVAKSNR 771
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 180 AKGSSNSYAIKKKDELERVAKSNR 203
Score = 122 bits (294), Expect = 7e-29
Identities = 65/108 (60%), Positives = 79/108 (73%), Gaps = 3/108 (2%)
Frame = +2
Query: 170 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 340
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRF
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 341 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 484
RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPL
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPL 108
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 30.7 bits (66), Expect = 0.28
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 362 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 484
V+ L N +M +GKK A +IV A II TGENP+
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPI 162
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 29.5 bits (63), Expect = 0.65
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 482 LASTRDCHYQLWTPVKIRLGSVVRVQFVVKPLMFHPCAES 601
++ + DC QLW+ ++ ++ +++VV + F+P ES
Sbjct: 312 VSGSLDCKIQLWSILRHKILHWTELEYVVSTICFYPDGES 351
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 434 VKHAFEIIHLLTGENP--LASTRDCHYQLWTPVKIRLGSVVRVQFVVKPLMFHPCAESTK 607
V H E++ + +N L S+ D +LW P + +V R +V + FHP +
Sbjct: 252 VGHNAEVLSISWSKNDFLLTSSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYF 311
Query: 608 XSG 616
SG
Sbjct: 312 VSG 314
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 370 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSGKY 492
PYK+ + + W + G+TY + + + L R+ + Y
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRETASTY 178
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 185 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 328
+ ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 560 TVPARPILVESSPGSRVDNGSHEYLPEGFLQLT 462
TVP P + ++P +EYLP G+ T
Sbjct: 49 TVPPPPFVNTTAPNGTCLGNYNEYLPSGYYNAT 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,869
Number of Sequences: 5004
Number of extensions: 63615
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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