Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C24
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 157 1e-38
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 151 7e-37
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 31 1.6
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 30 2.8
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 29 4.9
09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122 29 6.4
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 6.4
03_06_0610 + 35052455-35053429,35054936-35055511 29 6.4
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 28 8.5
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 157 bits (380), Expect = 1e-38
Identities = 73/95 (76%), Positives = 83/95 (87%), Gaps = 1/95 (1%)
Frame = +2
Query: 203 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 379
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 380 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 484
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPI 104
Score = 149 bits (361), Expect = 3e-36
Identities = 72/84 (85%), Positives = 79/84 (94%)
Frame = +1
Query: 520 PGEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADXLINA 699
P ED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+AD LINA
Sbjct: 116 PREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINA 175
Query: 700 AKGSSNSYAIKKKDELERVAKSNR 771
AKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 176 AKGSSNSYAIKKKDEIERVAKANR 199
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 151 bits (366), Expect = 7e-37
Identities = 70/94 (74%), Positives = 81/94 (86%), Gaps = 1/94 (1%)
Frame = +2
Query: 206 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 382
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 383 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPL 484
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPI 105
Score = 149 bits (361), Expect = 3e-36
Identities = 72/84 (85%), Positives = 79/84 (94%)
Frame = +1
Query: 520 PGEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADXLINA 699
P ED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+AD LINA
Sbjct: 117 PREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINA 176
Query: 700 AKGSSNSYAIKKKDELERVAKSNR 771
AKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 177 AKGSSNSYAIKKKDEIERVAKANR 200
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +2
Query: 146 EAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 325
+AGS+ V S + D+ E+K G + S S+ D +V E P S+ R
Sbjct: 578 DAGSIEVPVSSDCVSGDVDEVKSNGDLKSIHDETSPTSILD--TVFEDSNSNEPESSRRT 635
Query: 326 AHKRFRKAQCPIVERLTNSLMMHGRNNGKKLM 421
+ +CP ++ + S N+G L+
Sbjct: 636 SCTERVALRCPAIDSVARSFSWEDTNSGSPLL 667
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 380 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLASTRDCHYQLWTPVKIRL 538
+L +H +N L R K A +I+ LLT N T Q W V+++L
Sbjct: 904 ALRVHMADNTTHLFLTRTSKEAEDILWLLTASNFPQLTSSISLQSWEKVQLKL 956
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 562 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADXLINAAKGSSNS 720
RR+AV + +RR+ A WL GAR A R A ++ +A G S
Sbjct: 9 RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58
>09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122
Length = 370
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 440 HAFEIIHLLTGENPLASTRDCHYQLW 517
+AFEI L+ +NP+ RDC + ++
Sbjct: 336 NAFEIYTLIPSDNPMTFPRDCKHSIY 361
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 138 T*PRQAAWLWKPCLYHKPPTF 200
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 256 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 89
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 88 *K 83
K
Sbjct: 476 AK 477
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 385 NDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSGKYS*LPLSTLD 519
N+ ++ WQ T GRT Q C + N R +Y+ +PL +
Sbjct: 1594 NNYQALGWQATAGRTSMQRCAASTQWFNERISLARYAHVPLGNFE 1638
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,613,409
Number of Sequences: 37544
Number of extensions: 423478
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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