Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C21
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    56   6e-09

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 25/52 (48%), Positives = 29/52 (55%)
 Frame = +2

Query: 683 PRXXIIXGVGAXXVFARALIEAHYXCCLYAGVPIXGTXXEAMLSXWXXXSGP 838
           P+     GVG   VFAR ++EAHY  CLYAG+ I G   E M S W    GP
Sbjct: 158 PQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGP 209



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 233 LSKX-LLXRYXXLPLPEXXVLPTYVWIXGSGEXVRCXXXXLNYXPEXPKDLPIWNYXXXX 409
           LSK  +L +Y  LP     V+  Y+WI G    +R     L+  P     L +WN+    
Sbjct: 10  LSKAAILNKYADLP-QNGKVMAEYIWIDGFNH-LRSKTMTLDAKPSSIDQLRVWNFDGSS 67

Query: 410 XXXXXXXNSDTXLKPQAXY 466
                  NSDT LKP A Y
Sbjct: 68  TGQAPGNNSDTLLKPVAMY 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,473
Number of Sequences: 5004
Number of extensions: 18838
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)