Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C21
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943...    49   5e-06
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    47   2e-05
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642...    45   7e-05
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200...    44   2e-04

>02_05_0661 -
           30693701-30693853,30694037-30694196,30694290-30694381,
           30694469-30694543,30694671-30694799,30694916-30695003,
           30695118-30695224,30695645-30695693,30695802-30695905,
           30696108-30696147,30696838-30696911
          Length = 356

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +2

Query: 683 PRXXIIXGVGAXXVFARALIEAHYXCCLYAGVPIXGTXXEAMLSXWXXXSGP 838
           P+     G+GA   F R ++++HY  CLYAG+ I G   E M   W    GP
Sbjct: 153 PQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +2

Query: 287 VLPTYVWIXGSGEXVRCXXXXLNYXPEXPKDLPIWNYXXXXXXXXXXXNSDTXLKPQAXY 466
           ++  Y+WI GSG  +R     L+     P  LP WNY           +S+  L PQA +
Sbjct: 19  IIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIF 78


>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
            33659197-33659356,33660032-33660081,33662237-33662290,
            33662630-33662704,33662821-33662949,33663065-33663152,
            33663266-33663372,33663513-33663561,33663657-33663760,
            33663941-33663980,33664409-33664659,33664674-33664686,
            33665846-33666355,33666437-33667657,33667973-33668221,
            33668305-33668531
          Length = 1194

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +2

Query: 683  PRXXIIXGVGAXXVFARALIEAHYXCCLYAGVPIXGTXXEAMLSXWXXXSGP 838
            P+      VG+   F R + +AHY  CLYAG+ I GT  E M   W    GP
Sbjct: 952  PQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGP 1003



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 287 VLPTYVWIXGSGEXVRCXXXXLNYXPEXPKDLPIWNYXXXXXXXXXXXNSDTXLKPQAXY 466
           ++  Y+W+ G+G  +R     ++   E P +LP WNY           +S+  L PQA +
Sbjct: 818 IIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIF 877


>03_02_0210 -
           6425708-6425863,6425955-6426114,6426204-6426295,
           6426490-6426564,6426701-6426829,6427312-6427375,
           6427761-6427867,6428795-6428843,6428955-6429058,
           6429166-6429205,6429492-6429565
          Length = 349

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 710 GAXXVFARALIEAHYXCCLYAGVPIXGTXXEAMLSXWXXXSGP 838
           GA   F R +++AHY  C+YAG+ I G   E M   W    GP
Sbjct: 154 GAEKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGP 196



 Score = 34.7 bits (76), Expect = 0.094
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +2

Query: 287 VLPTYVWIXGSGEXVRCXXXXLNYXPEXPKDLPIWNYXXXXXXXXXXXNSDTXLKPQAXY 466
           ++  Y+W+ GSG  +R     +         LP WNY           +S+  L PQA +
Sbjct: 19  IIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQAIF 78


>03_05_0899 -
           28619081-28619208,28619309-28619369,28619936-28620095,
           28620200-28620237,28620341-28620394,28620562-28620636,
           28620744-28620872,28621172-28621259,28621340-28621446,
           28621547-28621595,28621683-28621786,28622019-28622133,
           28622517-28622596
          Length = 395

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 683 PRXXIIXGVGAXXVFARALIEAHYXCCLYAGVPIXGTXXEAMLSXWXXXSGP 838
           P+       GA   + R +++AHY  CL+AG+ I G   E M   W    GP
Sbjct: 180 PQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGP 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,456
Number of Sequences: 37544
Number of extensions: 168496
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)